Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00481 ATGGACTGGACGAGAGGCCGCGTTATTGGCCATGGCTCATCGGCCACCGTCTCCCTCGCCGCCTCTTGCCACTCTGCCGACGTTTTCGCCGTTAAGTCAGCGGAGCTAGCCCAGTCAGAGTTGCTacagagagaagagaaaattctaTCTTCTTTATGCTCTCCTCACGTAGTCAGCTACAGGGGGTTTGATATTTGCAGGGAGAACAACAAGGTCTTATACAATCTTTTCGTGGAGTATATGCCACTTGGCACGCTTATTCAAGCTGCTCACCGGCACGGTGGCCGGCTGGAGGAATCGGCGATCGCGTGCTATACACGGCAAGTTTTGCAGGGACTACAGTATCTACGTTCAATTGGGTTGGTACATTGTGACATTAAAGGTACCAACATCTTGATTAGTGAAGATGGTGCCAAAATTGCTGACTTTGGATGTGCTAAGTGGGTCAATGATGCCACGGCGGAGCAAATTAGCGGCACCCCAATGTTTATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAGGGGTGTCCTTCTGATATTTGGGCACTTGGGTGCACAGTAATCGAAATGGCTACCGGGAGTTCACCTTGGTCTAAGGTGGCAAACCCTGTTTCAGTTCTTTACAGAATTGCATATTCCGGCGAAACGCCAGAGATCCCAGTTTTTTTATCAGAACAAGCAAAGGATTTCTTGGGGAATTGTCTAAAGAGGAATCCAAAAGATAGGTGGACTGCCACTCAATTGCTCAAGCATCCATTTCTCGAGGAATTCAATTCTAAGGAAATTCAAGAATCAAATTCAACATCGTCGCCCACAAGTATTCTCGAGCAAGGCTTTTGGAATTGTTTAGAGGAATCACAAAGTTTTGGTAATTTGAGTCATGCAAGTTTTGAAAATTCCCCTGCTGACAGAATCAGACGGCTAGGAGTGTGCTCGGGGGAACCCAGCTGGAGATGGGACGACGATTGGATCATAACTAGAGGGACTCTCGAAGCCGGTTTCATTTCTGAGTCAGAGTCACCCACAACTTCAACCACTGACTCTGTGCAAGAGTTAGATAAAAGCAACGTCAAAACAATTAGTGGTAGTGGGTGCTTTGGTCATCTTTGCgatgattattatataagtAGTTTCAATTTTGAGAGAGGCTATGAATTTGATCAGTTGCGAGTCCCTTCggcatcaatttttttata 1196 0.4565 MDWTRGRVIGHGSSATVSLAASCHSADVFAVKSAELAQSELLQREEKILSSLCSPHVVSYRGFDICRENNKVLYNLFVEYMPLGTLIQAAHRHGGRLEESAIACYTRQVLQGLQYLRSIGLVHCDIKGTNILISEDGAKIADFGCAKWVNDATAEQISGTPMFMAPEVARGEEQGCPSDIWALGCTVIEMATGSSPWSKVANPVSVLYRIAYSGETPEIPVFLSEQAKDFLGNCLKRNPKDRWTATQLLKHPFLEEFNSKEIQESNSTSSPTSILEQGFWNCLEESQSFGNLSHASFENSPADRIRRLGVCSGEPSWRWDDDWIITRGTLEAGFISESESPTTSTTDSVQELDKSNVKTISGSGCFGHLCDDYYISSFNFERGYEFDQLRVPSASIFL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00481 398 ProSiteProfiles Protein kinase domain profile. 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva09g00481 398 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Bva09g00481 398 Gene3D Transferase(Phosphotransferase) domain 1 2 302 - -
Bva09g00481 398 SUPERFAMILY Protein kinase-like (PK-like) 2 295 IPR011009 -
Bva09g00481 398 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Bva09g00481 398 SMART serkin_6 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva09g00481 398 Pfam Protein kinase domain 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva09g00481 398 CDD STKc_MAPKKK 2 254 - -
Bva09g00481 398 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 342 - -
Bva09g00481 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Bva09g00481 398 PANTHER MAP KINASE KINASE KINASE 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00481 Bva-Chr9 2552616 2553245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00481 1 339 MAP Kinase Kinase Kinase AT2G32510 51.397 2.61e-117 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Bva09g00481 Pkinase 6.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00481 K20716 - qsu:112039629 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00481 09 2552616 2553245 Bva07g02163 07 18187376 18188605 BWGD
Bva09g00481 09 2552616 2553245 Bva09g00481 09 2552616 2553245 ECH
Bva09g00481 09 2552616 2553245 Bva13g00526 13 2386382 2387800 ECH