Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00462 ATGGAGGGTCCGGGAGCGGAAGAGCATAAGAAGTCTGACGCACATTTGACTTCAGCTGCCGCGTTTGTAGAGGGAGGAATCCAGGAAGCATGCGATGATGCTTGCAGCATTTGTCTTGAAGCCTTTTGTGATAGTGATCCTTCGACGGTGACAAGTTGCAAGCATGAGTTTCATCTTCAATGCATTCTGGAATGGTGCCAGAGGAGCTCCCAGTGCCCTATGTGTTGGCAGCCCATCAGCCTCAAAGATCCAACCAGCCAGGAACTGCTTGAGGCTGTGGAAAGAGAGAGGAACTTTAGGTTCAACCCTCCTAGAAATGCCACAATATTTCACCATCCAACACTGGGGGATTTTGAGTTACAGCATTTGCCAGTCGGTGCAAATGATTCTGACCTTGAAGAGCGTATAATCCAGCACttggctgctgctgctgcaatGGGGCGAGCACACCACATCTCTAGAAGGGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACATTTCTTGGTATTTTCAACTCATCCTAATTCACCTCCTATGGCTCCTACATCTTCCTCTCCAACTCAGAGGGGGGATGGTGAACCAACTCCTGCAATCACTGTACCTGCTCTACCTTCAACTCCTGCAACTGGAGAAGAGTCGTCGCAGGCAACTTCAGTTCCTCCTGTTCAACCTGAACAGGTTTCTGCTTCAGGATCTGGATCTACTGCTGTTGCCGCTGATCAGCATGGATCATCTTTCAATAATAGGAAATCTCCTGGTCAATCGTCCCCCAGTAATCAAGATAGAGCTGGGCCATCTGAATTACAATCATTTTCAGAATCTCTGAAGTCACGATTAAATGCTGTGTCAATGAGaTGTAAAGAGTCAATTTCTAAGAGCACAAGAGGATGGAAGGAGAGATGGTTCTCTCGCAACACCTCTATGTCTGATCTGGGATCTGAAGTTAGAAGAGAGGTTAATGCAGGGATTGCAACTGTATCACGTATGATGGAACGTATGGAAACTGGAGACAATAATAGAACTATTAATGATTCTACAGAATCTGCACAGACTGCACCAACTAGTTTAGAAGATAGTACAATTCCAGTATCGAATGACCAGCAGTCATCAAACTCAGCTTTGTTTTGTCCTGAAGGTGCAGGTGCGGCTCTGGATAATCACTATACCTATGTGAAGATAACTGTTGTTTG 1199 0.4545 MEGPGAEEHKKSDAHLTSAAAFVEGGIQEACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRFNPPRNATIFHHPTLGDFELQHLPVGANDSDLEERIIQHLAAAAAMGRAHHISRREGQRNRSSAQGRPHFLVFSTHPNSPPMAPTSSSPTQRGDGEPTPAITVPALPSTPATGEESSQATSVPPVQPEQVSASGSGSTAVAADQHGSSFNNRKSPGQSSPSNQDRAGPSELQSFSESLKSRLNAVSMRCKESISKSTRGWKERWFSRNTSMSDLGSEVRREVNAGIATVSRMMERMETGDNNRTINDSTESAQTAPTSLEDSTIPVSNDQQSSNSALFCPEGAGAALDNHYTYVKITVV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00462 399 MobiDBLite consensus disorder prediction 178 195 - -
Bva09g00462 399 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Bva09g00462 399 MobiDBLite consensus disorder prediction 342 372 - -
Bva09g00462 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 84 IPR013083 -
Bva09g00462 399 SUPERFAMILY RING/U-box 27 83 - -
Bva09g00462 399 MobiDBLite consensus disorder prediction 209 275 - -
Bva09g00462 399 MobiDBLite consensus disorder prediction 170 275 - -
Bva09g00462 399 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 5 381 - -
Bva09g00462 399 Pfam Ring finger domain 34 75 IPR001841 -
Bva09g00462 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 5 381 - -
Bva09g00462 399 SMART ring_2 35 75 IPR001841 -
Bva09g00462 399 MobiDBLite consensus disorder prediction 340 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00462 Bva-Chr9 2475727 2479801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00462 32 83 C3H Transcription Factor Family AT4G00335 44.231 7.08e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00462 K19043 - gmx:100814908 590.112