Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00446 ATGGATGAAATTGAAGTTCCTCCCCATTTTCTTTGCCCTATTTCCCTGCAACTCATGAGAGACCCTGTTACAATCTCTACAGGAATCACTTACGATAGAGAAAATATTGAGAGATGGTTATTTTCATGCAAGAACAGTAGTTGCCCTGTCACTAAGCAATCACTGTCAGACACAGATCTAACTCCAAACCACGTTCTGCGCCGTTTGATCCAAGCATGGTGCACCCTTAACGCCTCCCGTGGCATTGAACGCATTCCAACTCCAAAGCCACCCGTTGACAAAACCCAGATTATTAGAATCCTCTCTGAAGCAAAGAGGTTTCCCGATGAGCAGCTCAAATGCCTTAGAAGGCTTCGATCTATTGCTTTCGAAAGCGAAAGGAACAAGAGCTGTTTGGAGTCAGCAGGTGCAATAGAATTCTTGGCTTCGAGTTTGAAGAACAGTGAAGAAGATTCAACTCTGCAGACTGAAGCTGAAGCTGCTATTGAAGTCTTGTTTCATCTAAATCCTTCTGAAATACATTTTAAGAGTCTAATGAGCAACGAGGGCATTCAATTTGTTGAGTCTCTAgcacaaattttgaaacttggGAACTATCAATCTAGAGCTTATGGAACCATGTTATTGAAGTCAGCGTTTGAAGCAGCTGATCCAACCCAGTTGACCAGTGTCAGATCAGAACTATTTGTGGAAATAATGAGAGTGCTGCGAGATCAGATTTCACAGCAGGCTACCAAGGCTGCATTGAAGCTTCTTGTGGAGCTCTGTCCATGGGGCAGAAACCGAATCAAAGCCGTTGAAGGCGGTGCCGTTTTGGTGCTGATAGAGCTCCTTCTTGATTCCTCTGAAAGAAGAACATGCGAGCTCATGCTAATTGCTTTGGATCAACTTTGTGGGTGTGCAGAAGGGAGAGCAGAATTGTTGAAGCATGGAGCAGGAGTGGCCATAGTGTCCAAGAAAATTCTAAGAGTTTCTCATGTGGCAAGTGATAGAGGGGTTAGAATTTTGACCTCCATTTGCAGGTATTCGGGCACTAACAAAGTCCTTCAAGAAATGTTGCAAGTTGGGGCAGTGTCCAAATTGTGTTTGGTGCTTCAGGTGAATGGAAATTTGAAGACAAAGGAGAGAGCCAAGGAGATGCTCAAATTGCATTCTAGAGTATGGAAGAATTCTCCATGTATGCCTCTTCCTTTGCTCTATTCCTATCCATCAGATTa 1217 0.4306 MDEIEVPPHFLCPISLQLMRDPVTISTGITYDRENIERWLFSCKNSSCPVTKQSLSDTDLTPNHVLRRLIQAWCTLNASRGIERIPTPKPPVDKTQIIRILSEAKRFPDEQLKCLRRLRSIAFESERNKSCLESAGAIEFLASSLKNSEEDSTLQTEAEAAIEVLFHLNPSEIHFKSLMSNEGIQFVESLAQILKLGNYQSRAYGTMLLKSAFEAADPTQLTSVRSELFVEIMRVLRDQISQQATKAALKLLVELCPWGRNRIKAVEGGAVLVLIELLLDSSERRTCELMLIALDQLCGCAEGRAELLKHGAGVAIVSKKILRVSHVASDRGVRILTSICRYSGTNKVLQEMLQVGAVSKLCLVLQVNGNLKTKERAKEMLKLHSRVWKNSPCMPLPLLYSYPSD 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00446 405 SUPERFAMILY RING/U-box 3 77 - -
Bva09g00446 405 PANTHER WDSAM1 PROTEIN 1 403 IPR045185 GO:0061630
Bva09g00446 405 Gene3D - 80 387 IPR011989 -
Bva09g00446 405 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Bva09g00446 405 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Bva09g00446 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Bva09g00446 405 SUPERFAMILY ARM repeat 107 377 IPR016024 -
Bva09g00446 405 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Bva09g00446 405 CDD RING-Ubox_PUB 10 53 IPR045210 -
Bva09g00446 405 PANTHER OS11G0573500 PROTEIN 1 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00446 Bva-Chr9 2368941 2370158 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00446 2 403 U-box Gene Family AT2G35930 55.419 1.03e-167 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00446 - - gmx:100778012 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00446 09 2368941 2370158 Bva07g02199 07 18395019 18396239 BWGD
Bva09g00446 09 2368941 2370158 Bva09g00446 09 2368941 2370158 ECH