Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00442 ATGGCAACGTACTTTCACGGCAGTAACTCAGAAATCCAATCTTCTGGTGATGGGTTGCAGACACTTTACCTTATGAATCCCAGCTACGTACCCTATTCTGACAGTACGGCAGCCCAGCATCAGCACCCAACAACCCCGAACATGGTCCTTTTTAATCCCAACACAGCCGGCAACGCGCTTAACCTCGCCAACTTCTCCCACGCGCCACCACAATCCCCCAACCAACAACACCTTATTGGTGTTACCATTCCTCCAAACATCATCGGTTCCAACAACTCAGAAGATCCCGCTCGACCCTCCTTGATTGCCCATGCCGGCCACCATGAAATCTCAGGCTTCCATGGCTTCCCCACCGCCTCAGCGCCGCGTGTCCACTACAACTTGTGGGGTTCAATGATTGATCAAACGGGGTCGGGGGCAGCGTCTGCGTCTACCAGTTCTGGCGCTGCCACCACCGGAGATGTCTCGCAGCAGATGGGTTTCCGGAGGCCCAGTCAGCAGGGCTTGTCACTCAGCCTTTCTTCACAACAAACAGCTTACAGGTCACTTTCCGGCGAGCTTGACGTGCCGGGACATGCTCGGGTTCTAGCTATTTCGCCATCGAGTCGTGGTGGTGGCAGCGGCGGCGATGGTATGAGGGTTCTTGGTAATTCTCCTTCGTCGGTGTCCAATGGGATTTCGAGTATGCAGGGTGTAATTTTTGGGTCTAAGTATTTGAAGGCTGCACAAGAGCTTCTGGATGAAGTTGTTCATGTGGGCAAGGGAATCAGCAAAGCTGACTCAATGGAGGGGGCTAATAAAGAGAAGATGGAAGCAAATAAAGAATCAAGTCCCGGAATCGGTGAAGGTTCAAGTGGCGGAGGACATCAAAATAATGGCAGGCATGGAGCTGAACTTAGCACTACTCAAAGACAAGAGCTTCAGATGAAAAAGTCCAAACTCGTTAGCATGCTTGATGAGGTGGAGCAAAGGTACAGACAGTATCATCACCAAATGCAAATTGTGATATCTTCATTTGAGCAGGCAGCGGGCTATGGTACAGCAAAATCATACACATCACTTGCCCTAAAGACTATCTCAAAGCAATTTCGATGTCTTAAAGATGCAATCACTTCACAAATCAGAGCCACAAATAAGACATTAGGTGAAGAAGATTGCCTGGGAGCTAAGATAGAAGGCTCAAGGCTTAGGTATGTTGATCATCACCTCCGGCAGCAACGGGCATTACAGCAGCTGGGAATGATTCAGCACAATGCTTGGAGAACCCAAAGAGGATTGCCTGAACGAGCTGTTTCCATCCTTCGTGCTTGGCTTTTCGAACATTTCCTTCACCCCTATCCTAAGGACTCTGATAAAGTTATGCTCGCAAAACAAACTGGACTTACTCGGAGTCAGGTGTCTAATTGGTTCATAAATGCGCGAGTTCGGCTATGGAAACCAATGGTTGAAGAAATGTACATGGAAGAAGTCAAGGAACAAGAGCAGAATGGCTCTCAGGACAATAATGGAAACAATTCAAAAGAACCACACAAGGAGTTGGGTTCATCAACAAATGCTCCCCAGGAATCTGGAAGCGGGCCCATTAGACTTGATCAGATCAAATCTTTCCAATCAAAACCAGAAAGCGTCAGCCACCAAAACGCTTCTCCAACTGAGATATCAAACTCTTCAATGTCAACAATGGGAGGTTCCCTTCAATCGCAGACAGGTTTTCATCTTGCAGGATCATCGATTGACATGCAAAGAAATCCAAACAAGCCCAGAAATTCTGAAATGCAAAACTCTGCAAGCAGCATTCTCTCAATGAACATGGAAATGAAACCTGGGGAAACAAATAGATCAGAAGTCACCACAAATTTTGGCATTGAAAGGCACAGAAAGGATGGTTACCCTTTAATAAATGGAAATACAAACCAACAAGGTTCAGGTGGTTATGGAGCATTCTCCATGGAAGACATTGGAAGGTTTAACGTCTCTGAACAATTGGCTCCAAGGTTTCATGGGAATGGTGTTTCCCTCACTCTGGGACTTCCCCATAGTGAGAACCATCCCCTCTCGGGAACCCAGCATGGATTTCTGTCTCCAAATATTCATTTGGGAAGGAGGCTTGAGATGGGATCCAATGGAACTGACTTTTGTGCAATCAATAATCCACCATCTTCTCATTCTGGCACTGGTTATGAGAGTATTGACattcaaaacagaaaaaggttTGCTGCTCAATTGTTGCCAGATTTCGTCACCTG 2246 0.4671 MATYFHGSNSEIQSSGDGLQTLYLMNPSYVPYSDSTAAQHQHPTTPNMVLFNPNTAGNALNLANFSHAPPQSPNQQHLIGVTIPPNIIGSNNSEDPARPSLIAHAGHHEISGFHGFPTASAPRVHYNLWGSMIDQTGSGAASASTSSGAATTGDVSQQMGFRRPSQQGLSLSLSSQQTAYRSLSGELDVPGHARVLAISPSSRGGGSGGDGMRVLGNSPSSVSNGISSMQGVIFGSKYLKAAQELLDEVVHVGKGISKADSMEGANKEKMEANKESSPGIGEGSSGGGHQNNGRHGAELSTTQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQIVISSFEQAAGYGTAKSYTSLALKTISKQFRCLKDAITSQIRATNKTLGEEDCLGAKIEGSRLRYVDHHLRQQRALQQLGMIQHNAWRTQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEVKEQEQNGSQDNNGNNSKEPHKELGSSTNAPQESGSGPIRLDQIKSFQSKPESVSHQNASPTEISNSSMSTMGGSLQSQTGFHLAGSSIDMQRNPNKPRNSEMQNSASSILSMNMEMKPGETNRSEVTTNFGIERHRKDGYPLINGNTNQQGSGGYGAFSMEDIGRFNVSEQLAPRFHGNGVSLTLGLPHSENHPLSGTQHGFLSPNIHLGRRLEMGSNGTDFCAINNPPSSHSGTGYESIDIQNRKRFAAQLLPDFVT 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00442 748 ProSiteProfiles 'Homeobox' domain profile. 417 480 IPR001356 GO:0003677
Bva09g00442 748 MobiDBLite consensus disorder prediction 496 570 - -
Bva09g00442 748 MobiDBLite consensus disorder prediction 576 595 - -
Bva09g00442 748 MobiDBLite consensus disorder prediction 490 570 - -
Bva09g00442 748 Pfam Associated with HOX 232 371 IPR006563 -
Bva09g00442 748 MobiDBLite consensus disorder prediction 261 306 - -
Bva09g00442 748 MobiDBLite consensus disorder prediction 278 306 - -
Bva09g00442 748 SMART HOX_1 420 484 IPR001356 GO:0003677
Bva09g00442 748 SMART prehox3 227 372 IPR006563 -
Bva09g00442 748 MobiDBLite consensus disorder prediction 197 219 - -
Bva09g00442 748 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 697 - -
Bva09g00442 748 SUPERFAMILY Homeodomain-like 423 487 IPR009057 -
Bva09g00442 748 Gene3D - 423 501 - -
Bva09g00442 748 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 697 - -
Bva09g00442 748 MobiDBLite consensus disorder prediction 137 168 - -
Bva09g00442 748 MobiDBLite consensus disorder prediction 261 275 - -
Bva09g00442 748 CDD homeodomain 420 481 IPR001356 GO:0003677
Bva09g00442 748 Coils Coil 304 324 - -
Bva09g00442 748 Pfam Homeobox KN domain 437 476 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00442 Bva-Chr9 2350245 2354623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00442 1 747 Homeobox Transcription Factor Family AT2G35940 44.304 7.74e-147 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva09g00442 POX 7e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00442 09 2350245 2354623 Bva07g02202 07 18408593 18413010 BWGD
Bva09g00442 09 2350245 2354623 Bva09g00442 09 2350245 2354623 ECH