Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00397 ATGGCTGTGGCGGCAGCGAGTGAGGGTGATGGTGGCAGCAATGGTGGTGTGACAATGGTGGTGAAGAGTTGGAGACAAAGAAAGTTGGAATTGGCTTCTAAAGCTATTGATGAcctaaataataaagaatttaagggtaaaagaataaaatgttcGACGTCTCAAGCAAAACAACGTCTTTTCATTGTTAATGTTCCTAGAAGTTGGGGTGAGGAAGATCTGAGGAAAGTTGTGACTGAGATTGGGCCTGGAGTTACTGCTATAGAACTAGTCAAGGTAAAGGCAGTATATGTGAAGAACTTGCCTAAGAATATAACTCAAGACCAGTTAAGGAAGCTTTTTGAACACCACGGGAAGATCGCTAAGGTGGTTCTGCCGCCAGCAAAGTCTGGACAGGAAAAGAACAGGATTGGTTTTGTACATTTTGCAGAGAGATCAAGTGCTATGAAGGCACTAAAAAACACTGAAAGATATGAATA 479 0.3967 MAVAAASEGDGGSNGGVTMVVKSWRQRKLELASKAIDDLNNKEFKGKRIKCSTSQAKQRLFIVNVPRSWGEEDLRKVVTEIGPGVTAIELVKVKAVYVKNLPKNITQDQLRKLFEHHGKIAKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKNTERYE 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00397 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 155 IPR000504 GO:0003723
Bva09g00397 159 PANTHER RNA RECOGNITION MOTIF 26 92 - -
Bva09g00397 159 Gene3D - 30 55 IPR012677 -
Bva09g00397 159 Gene3D - 56 83 IPR012677 -
Bva09g00397 159 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 92 159 - -
Bva09g00397 159 Gene3D - 94 159 IPR012677 -
Bva09g00397 159 PANTHER RNA RECOGNITION MOTIF 92 159 - -
Bva09g00397 159 SUPERFAMILY RNA-binding domain, RBD 93 154 IPR035979 GO:0003676
Bva09g00397 159 SMART rrm1_1 95 159 IPR000504 GO:0003723
Bva09g00397 159 SUPERFAMILY RNA-binding domain, RBD 30 88 IPR035979 GO:0003676
Bva09g00397 159 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 26 92 - -
Bva09g00397 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00397 Bva-Chr9 2138100 2140504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00397 96 153 Eukaryotic Initiation Factors Gene Family AT1G71770 43.103 1.72e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00397 K13161 - rcu:8271927 149.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00397 09 2138100 2140504 Bva09g00397 09 2138100 2140504 ECH