Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00380 ATGGGTTTGAGGGAATGCAACgtagaagagaaaaatcttTACCTTCACCCTCCAACTTTCATTGAATGGCTCAAGCCATCTTCTTCGTCAGTGACCTCTTCATTATCATCATCTCCCACTCTTCCTGATCAACATGAGCTTGTACGGGAGACTATCCAGTTTCTGCCAATTTTAAGTGGGTTAACCTCAAAAGAGGAAGATCTTGGAGTGAAAGAAGAGCAAGTGACTGTTGCTTTGCATATTGGATTACCCAACACAGAAGAAGATTATCATCCAACTGAGGCTGATGAGAAGAAGGTTTTTGACGTTAAGGAAGAAGAGGACGCCAAGAAAAGCTTCCATGGCTGCTCTTTTAATCCAGAAAGAAGGTTTTGGATCCCAACTCCTGCACAGATCCTTGTTGGGCCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATCGGTATAACAACATGCAGATGCATATGTGGGGACATGGGTCCCAATTTAGAAAAGGACCGGACTCCCTTAGAGGAACACAGCCAGCAGCAATGCTGAGACTACCTTGCTATTGCTGTGCACAAGGCTGCAAGAACAACATCAATCATCCAAGAGCAAAGCCACTGAAGGATTTCAGAACCCTCCAAACCCACTACAAAAGAAAGCATGGAGCAAAGCCCTTCATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGAGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTATGGTACTGCACTTGTGGTTCAGATTTCAAACACAAAAGATCTCTGAAAGATCACATCAGATCCTTCGGAAATGGTCACTCCCCACATCCTTCTCTTGAAGGTTATGAAGATGAGAAGGAATGCATTACTGGGTCTGAAGATGAGGTTGCTCACACTTG 902 0.4368 MGLRECNVEEKNLYLHPPTFIEWLKPSSSSVTSSLSSSPTLPDQHELVRETIQFLPILSGLTSKEEDLGVKEEQVTVALHIGLPNTEEDYHPTEADEKKVFDVKEEEDAKKSFHGCSFNPERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSQFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGNGHSPHPSLEGYEDEKECITGSEDEVAHT 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00380 300 Gene3D Classic Zinc Finger 180 272 - -
Bva09g00380 300 MobiDBLite consensus disorder prediction 269 300 - -
Bva09g00380 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Bva09g00380 300 SUPERFAMILY beta-beta-alpha zinc fingers 209 243 IPR036236 -
Bva09g00380 300 Gene3D Classic Zinc Finger 138 161 - -
Bva09g00380 300 PANTHER ZINC FINGER PROTEIN WIP2 1 38 IPR043584 GO:0003700|GO:0010468
Bva09g00380 300 PANTHER ZINC FINGER PROTEIN WIP2 43 299 IPR043584 GO:0003700|GO:0010468
Bva09g00380 300 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Bva09g00380 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 243 IPR013087 -
Bva09g00380 300 SUPERFAMILY beta-beta-alpha zinc fingers 130 161 IPR036236 -
Bva09g00380 300 MobiDBLite consensus disorder prediction 279 300 - -
Bva09g00380 300 SMART c2h2final6 186 218 IPR013087 -
Bva09g00380 300 SMART c2h2final6 139 161 IPR013087 -
Bva09g00380 300 SMART c2h2final6 223 243 IPR013087 -
Bva09g00380 300 Pfam Zinc finger, C2H2 type 139 158 IPR013087 -
Bva09g00380 300 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 38 - -
Bva09g00380 300 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 43 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00380 Bva-Chr9 2041876 2044772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00380 9 291 C2H2 Transcription Factor Family AT1G08290 57.100 2.66e-123 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva09g00380 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00380 - - gmx:100802773 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00380 09 2041876 2044772 Bva07g02265 07 18722455 18725208 BWGD
Bva09g00380 09 2041876 2044772 Bva09g00380 09 2041876 2044772 ECH