Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00376 ATGTATAGTAATTTCAAGGAGCAAGCGATAGAATACGTGAAGCAAGCCGTGCAGGAAGACAATGCTGGGAATTACGCAAAAGCGTTTCCTTTGTATATGAATGCTTTGGACTACTTTAAGACCCATTTGAAGTACGAGAAAAACCCTAAGATCAAAGAAGCGATTACCCAGAAATTCACCGAGTATCTGCGGCGGGCGGAAGAGATCCGAGCTGTTCTTGATGATGGAGGGCCTGGGCCAGCTTCCAATGGGGATGCTGCAGTAGCAACACGGCCCAAGACGAAGCCTAAGAATGGTGAGGGTGATGGGGAGGACCCCGAGCAGGCAAAGCTCAGAGCTGGTCTTAATTCAGCCATTATTCGGGAGAAACCCAATGTTAAGTGGAATGACGTTGCTGGATTGGAAAGCGCCAAGCAAGCCTTGCAGGAGGCAGTTATTCTTCCCGTGAAGTTCCCGCAGTTCTTTACTGGCAAAAGACGGCCCTGGAGAGCTTTTCTCTTGTACGGGCCACCCGGAACCGGTAAATCTTATTTGGCCAAGGCTGTTGCAACCGAAGCTGAATCCACTTTTTtcagTGTCTCATCATCAGACTTGGTTTCGAAGTGGATGGGTGAAAGTGAAAAGTTAGTATCCAATCTCTTCGAAATGGCTCGGGAAAGTGCTCCCTccatcatttttattgatgaaatagATTCTCTATGTGGTCAGCGAGGGGAAGGCAATGAAAGTGAAGCTTCAAGACGAATCAAGACTGAACTTCTAGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACCCCGTATGCTCTCGATCAGGCAATAAGGAGGCGTTTTGATAAGCGGATATACATTCCTCTGCCAGATTTAAAGGCTCGACAACACATGTTCAAGGTGCACTTAGGGGATACTCCCCATAATCTGACTGAAAGTGATTTTGAACACTTGGCTCGTAGGACAGAGGGGTTTTCCGGCTCAGATATATCTGTTTGTGTTAAGGATGTTTTATTTGAGCCTGTTCGCAAAACCCAAGATGCCATGTTCTTCTTTAAGAATTCTGACGGAATGTGGATCCCGTGTGGACCAAAGCAAAAAGGTGCTGTACAGATCACGATGCAGGAGCTTGCTGCAGAGGGATCTGCTTCTAAGATCCAACCACCACCTATTACGAAAACAGATTTTGATAAGGTGCTTGCTAGACAAAGGCCTACAGTAAGCAAAGCTGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGttg 1298 0.4553 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALDYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKNGEGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNSDGMWIPCGPKQKGAVQITMQELAAEGSASKIQPPPITKTDFDKVLARQRPTVSKADLDVHERFTKEFGEEG 432
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00376 432 ProSitePatterns AAA-protein family signature. 267 286 IPR003960 GO:0005524|GO:0016887
Bva09g00376 432 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 432 - -
Bva09g00376 432 SMART smart 2 79 IPR007330 -
Bva09g00376 432 Gene3D - 6 75 - -
Bva09g00376 432 SUPERFAMILY MIT domain 2 81 IPR036181 -
Bva09g00376 432 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Bva09g00376 432 Pfam ATPase family associated with various cellular activities (AAA) 166 295 IPR003959 GO:0005524|GO:0016887
Bva09g00376 432 PANTHER AAA DOMAIN-CONTAINING 1 432 - -
Bva09g00376 432 CDD AAA 132 295 - -
Bva09g00376 432 MobiDBLite consensus disorder prediction 73 108 - -
Bva09g00376 432 Gene3D - 297 412 - -
Bva09g00376 432 Pfam Vps4 C terminal oligomerisation domain 365 429 IPR015415 -
Bva09g00376 432 Gene3D - 124 420 IPR027417 -
Bva09g00376 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 428 IPR027417 -
Bva09g00376 432 SMART AAA_5 161 297 IPR003593 -
Bva09g00376 432 CDD MIT_VPS4 4 77 IPR045253 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva09g00376 Bva-Chr9 2026005 2029790 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00376 160 353 Calmodulin-binding Proteins AT3G56690 37.245 1.85e-35 137
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00376 K12196 - gmx:100788150 832.017
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00376 09 2026005 2029790 Bva07g02271 07 18745802 18750047 BWGD
Bva09g00376 09 2026005 2029790 Bva09g00376 09 2026005 2029790 ECH
Bva09g00376 09 2026005 2029790 Bva07g02271 07 18745802 18750047 ECH