Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva09g00376 | ATGTATAGTAATTTCAAGGAGCAAGCGATAGAATACGTGAAGCAAGCCGTGCAGGAAGACAATGCTGGGAATTACGCAAAAGCGTTTCCTTTGTATATGAATGCTTTGGACTACTTTAAGACCCATTTGAAGTACGAGAAAAACCCTAAGATCAAAGAAGCGATTACCCAGAAATTCACCGAGTATCTGCGGCGGGCGGAAGAGATCCGAGCTGTTCTTGATGATGGAGGGCCTGGGCCAGCTTCCAATGGGGATGCTGCAGTAGCAACACGGCCCAAGACGAAGCCTAAGAATGGTGAGGGTGATGGGGAGGACCCCGAGCAGGCAAAGCTCAGAGCTGGTCTTAATTCAGCCATTATTCGGGAGAAACCCAATGTTAAGTGGAATGACGTTGCTGGATTGGAAAGCGCCAAGCAAGCCTTGCAGGAGGCAGTTATTCTTCCCGTGAAGTTCCCGCAGTTCTTTACTGGCAAAAGACGGCCCTGGAGAGCTTTTCTCTTGTACGGGCCACCCGGAACCGGTAAATCTTATTTGGCCAAGGCTGTTGCAACCGAAGCTGAATCCACTTTTTtcagTGTCTCATCATCAGACTTGGTTTCGAAGTGGATGGGTGAAAGTGAAAAGTTAGTATCCAATCTCTTCGAAATGGCTCGGGAAAGTGCTCCCTccatcatttttattgatgaaatagATTCTCTATGTGGTCAGCGAGGGGAAGGCAATGAAAGTGAAGCTTCAAGACGAATCAAGACTGAACTTCTAGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACCCCGTATGCTCTCGATCAGGCAATAAGGAGGCGTTTTGATAAGCGGATATACATTCCTCTGCCAGATTTAAAGGCTCGACAACACATGTTCAAGGTGCACTTAGGGGATACTCCCCATAATCTGACTGAAAGTGATTTTGAACACTTGGCTCGTAGGACAGAGGGGTTTTCCGGCTCAGATATATCTGTTTGTGTTAAGGATGTTTTATTTGAGCCTGTTCGCAAAACCCAAGATGCCATGTTCTTCTTTAAGAATTCTGACGGAATGTGGATCCCGTGTGGACCAAAGCAAAAAGGTGCTGTACAGATCACGATGCAGGAGCTTGCTGCAGAGGGATCTGCTTCTAAGATCCAACCACCACCTATTACGAAAACAGATTTTGATAAGGTGCTTGCTAGACAAAGGCCTACAGTAAGCAAAGCTGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGttg | 1298 | 0.4553 | MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALDYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKNGEGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNSDGMWIPCGPKQKGAVQITMQELAAEGSASKIQPPPITKTDFDKVLARQRPTVSKADLDVHERFTKEFGEEG | 432 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva09g00376 | 432 | ProSitePatterns | AAA-protein family signature. | 267 | 286 | IPR003960 | GO:0005524|GO:0016887 | |
| Bva09g00376 | 432 | PANTHER | AAA-TYPE ATPASE FAMILY PROTEIN | 1 | 432 | - | - | |
| Bva09g00376 | 432 | SMART | smart | 2 | 79 | IPR007330 | - | |
| Bva09g00376 | 432 | Gene3D | - | 6 | 75 | - | - | |
| Bva09g00376 | 432 | SUPERFAMILY | MIT domain | 2 | 81 | IPR036181 | - | |
| Bva09g00376 | 432 | Pfam | MIT (microtubule interacting and transport) domain | 7 | 70 | IPR007330 | - | |
| Bva09g00376 | 432 | Pfam | ATPase family associated with various cellular activities (AAA) | 166 | 295 | IPR003959 | GO:0005524|GO:0016887 | |
| Bva09g00376 | 432 | PANTHER | AAA DOMAIN-CONTAINING | 1 | 432 | - | - | |
| Bva09g00376 | 432 | CDD | AAA | 132 | 295 | - | - | |
| Bva09g00376 | 432 | MobiDBLite | consensus disorder prediction | 73 | 108 | - | - | |
| Bva09g00376 | 432 | Gene3D | - | 297 | 412 | - | - | |
| Bva09g00376 | 432 | Pfam | Vps4 C terminal oligomerisation domain | 365 | 429 | IPR015415 | - | |
| Bva09g00376 | 432 | Gene3D | - | 124 | 420 | IPR027417 | - | |
| Bva09g00376 | 432 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 124 | 428 | IPR027417 | - | |
| Bva09g00376 | 432 | SMART | AAA_5 | 161 | 297 | IPR003593 | - | |
| Bva09g00376 | 432 | CDD | MIT_VPS4 | 4 | 77 | IPR045253 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva09g00376 | Bva-Chr9 | 2026005 | 2029790 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva09g00376 | 160 | 353 | Calmodulin-binding Proteins | AT3G56690 | 37.245 | 1.85e-35 | 137 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva09g00376 | K12196 | - | gmx:100788150 | 832.017 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva09g00376 | 09 | 2026005 | 2029790 | Bva07g02271 | 07 | 18745802 | 18750047 | BWGD | |
| Bva09g00376 | 09 | 2026005 | 2029790 | Bva09g00376 | 09 | 2026005 | 2029790 | ECH | |
| Bva09g00376 | 09 | 2026005 | 2029790 | Bva07g02271 | 07 | 18745802 | 18750047 | ECH |