Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00368 ATGAACGGAGAAAGCCGAAGACGGGACCGTGACCGCCGAGACCCGCGCAGATCCAAGAAGCAGAAGCTACTTCGCACCGCTGAGGAAGAGCTTGAGTCAAAGCTAGGGTTCGATCTATTCTCCGAGGGCGAAAAAAGGCTTGGGTGGTTGCTTAACTTTGCATCTTCATCTTGGGAGGACGAAGAGACCCAAAAAGTTTACAGCTGTGTTGatctttattttgttacaCAGGATGGTTCCACATTTAAGTCAAAATACCGGTTTCGTCCTTATTTCTATGCGGCCACAAAGgataaaatggaGATGGATGTCGAAGCATATCTGAGACGACGCTACGAAAGTCAGATTGCAGATGTTGAAATTGTGGAGAAGGAAGACCTTGATCTTAAAAACCATTTGTCTGGGTtacaaaaatcttatttaaagCTGTCTTTTGATACCGTGCAACAACTGATGAATGTGAAGAGTGATCTGATGCATGTTGTGGAAAGAAATCAGGCAAAGTCTGATACTGCGGAAGCCTACGAGTCCATATTAACCATAAGAAGAGAACAGAAACCTCAAGATTTTCTAGATTGTATTGTTGATCTTCGCGAGTATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAACGATGTAAGATGCGGCCAGTGGTATGATGTGAGTGTGTCTAGTACTGGGGTTGCACTTGAGAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGACATTGAGACAACGAAACTTCCATTGAAGTTTCCTGATGCTGACTATGATATGGTTATGATGATTTCGTACATGGTAGACGGGCAAGggtatttaataattaatcgagagtGTGTTGGAGATGATATAGAGGATTTGGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGTCCTAAACGAGGTTGAGCTTCTTAAATTGTGGTTTTCCCATATGCAAGATGTGAAGCCCGGTATATATGTCACATATAATGGTGATTTCTTTGATTGGCCGTTTCTGGAAAGCAGGGCAACCCATCATGGGTTCAAAATGAGCGATGAGTTAGGATTTCAATGTGACAAGGGTCAAGGTGAATGTCGTGCAAAATTTGCTTGTCATTTAGACTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAGGGCCTTAAGgCTGTAACAAAGGCAAAATTGGGTTATGATCCCCTGGAGGTGAACCCTGAGGATATGGTTCGCTTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCCGTTTCTGATGCTGTAGCAACTTATTTCTTGTATACAACCTATGTTCAtccctttattttctctcttgcgACTATTATTCCCATGTCACCGGACGAGGTTTTGCGCAAAGGTAGTGGGACCCTCTGTGAAATGTTGCTCATGGTCCAGGCATACAAGGCAAATGTTATTTGCCCAAACAAACACCAATCTGATCCAGAGAAGTTTTATCACAGTCACCTTCTTGAGAGCGAGACATATATAGGAGGCCATGTGGAATGCCTTGAAAGTGGCGTATTCAGATCTGATCTTCCAACTAGTTTTACACTTGAACCATCTGCCTATGAGCAACTGATCAATAACCTTGATCGAGATCTGCAATATGCTATAAGAGTGGAGGGTAAGATGGACTTGGAATCTGTCTGTAATTATGATGAAGTGAAAAATGCTATCATAGAAAAGCTAGTAAAATTGCGCGACGAGCCAATACGGGAGGAATGCCCCCTCATTTATCATCTTGATGTAGCTGCTATGTAtccaaacattattttaacaaacagACTTCAGCCGCCATCAATTGTGACGGATGAGGTCTGCACTGCATGTGATTTCAACCGTCCTGGGAAAACTTGCCTCCGGAAGCTTGAGTGGGTTTGGCGCGGAGAGATATTCATGGCCAAGAGAAGTGACTATTATCATTTAAAGAAGCAAATTGAGTCGGAGTTTGTTGATAGCGCTGATGGTCGttcatcaaaatcttttttagaTCTGCCAAAGTCAGAGCAACAATTAAGGCTAAAAGAGCGTCTAAAGAAATACTGCCAGAAGGCATATAAACGGGTACTTGACAAACCCGTTACCGAACTTCGTGAAGCAGGGATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGCTTTCGTGATAGAAGATATGAGTATAAAGGTCTTAATAAGGTTTGGAAGGGAAAACTGTCCGAAGCCAAGGCCAGTGGAAATTCTATAAAGATCCAGGAAGCACAAGACATGGTAGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCCGGGGTTGTCACATATACTGGTGCAAAGATAATTCAGAATGCCCGCTTGCTGGTAGAGAAAATAGGAAAACCCCTTGAGTTAGACACAGATGGTATCTGGTGTGCACTTCCTGGATCTTTTCCAgaaaatttcacttttaaaaCAAAAGACTCAAAGAAGTTGACAATCTCATACCCTTGTGTTATGCTTAACGTGGATGTGGCaagaaataatacaaataaccAGTACCAGACACTCACAGATCCAATTAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAAGTGGATGGACCATACAAGGCAATGATTCTACCTGCTTCCAAGGAAGAAGGAATTCTAATCAAGAAGCGATATGCTGTATTTAATGATGATGGAACTTTAGCAGAGCTGAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTCAAGCTAATAAAAGTATTCCAGGCTGAGCTTTTCGACAAATTTCTCCATGGGTCAACGTTGGAGGAATGCTACTCCACTGTTGCTTCTGTGGCAAACGGCTGGCTCGATCTTCTTGATAACCAAGGGAAGGATATTGCAGATAGTGAGTTACTTGATTATATATCTGAGTCAAGCACTATGAGCAAGTCTTTAGCTGATTATGGTGATCAGAAGTCTTGTGCTGTTACCACTGCTAGACGGCTTGCTGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGTTGTCAGTACATAGTAGCATGTGAACCTAAGGGAACACCTGTGAGCGAGCGTGCTGTTCCAGTGGCAATATTTGAAACTGATACTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTTTCATCAGATGTTGGTATTCGATCCATAATTGACTGGTCCTATTACAAGCAACGACTAAGTTCTGCAATTCAAAAAATTGTCACTATTCCTGCTGCAATGCAAAAGGTTGCTAATCCAGTTCCTCGGGTAGTTCATCCTGATTGGTTGTATAAGAAGGTGCGTGAGAAGGAGGACAAATTTCGCCAACGAAAATTAGTTGATGTCTTCAACTCAATGAGCAGAGATATCCAGTCAAAAAGGCATGGTGATTCTAATAATACTTCCCATGTAATGGACGGAGACTTGGAAGACTTTGGAAACAAGAGCAAGAGTTCTATCACTGGACCTAGGCCTATTATACGACATTATGAAGCTAATAGTGAGTTGCATTCAGTGAAGTGCAATGGCCAAGTAGATTCTGAGCAACATCATTATGATAACAGCAGTAAGCGTCAGCCAGTTGCACAATcacaagaaattgaaatatcaTCTGAAGATGTTGACAGAACTGTAGATTATCAAGGATGGCTTAAAATGAAGAAGCGAAAGTGGAAATTTATACtcgaaaagagaaagaaacaaagaTTGGATAAATTGAAGAGATCAGCCCGTGTTAATGGTGTTCTTGAAAATCCGAGCGGTATGGTAGATCATGCAGCTCAGGGCAGAAATAATGTTGGTTCATATTTCAGAAGGCACGAGGTTGCCCTAACGCAGTGTTATTGGCAGATAATACAGCTAGTTAACGGTTCACAGAATACACAATTTTTTGCGTGGGTTCTTGTTGATGGGGTTATGCTTAAGATTCCTGTATCTGTGCCTAGAGTCTTTTACCTAAATTCCAAGTCACCTATTACTGAAGAATTTCTGGGTAAGCGTGTCAGCAAGACTCTTCCGCATGGAAGGCATACTTATAACCTGTATGAGgtTACAATTACTGAAGTTCAATTTAGGGAAGCAAGCAAAAAGACTGAAGCTCTGTTAGCAGATCCTGATGTTGAGGGAATATATGAAACAAAGGTGCCACTCGAGTATAATGCTATAGTCCAGCTTGGTTGTGTATGCAAGGTGGATAAGACCGCTAAAAAACGTGGTCTGCAAGATCCTTGGTGTCTGAGTGAATTGCACATGAAGACCACGACAGAATGTGCTTATCTGGAACAGTCcatatctttcttttacttataTCACAGCATCTCAGAGGGACGAGCTATATATGTCGGTTACTTTCCTGCATCAAAAACAATATCTGTTGTGGTAGTTAATCCCTATCAGAACAAAGATTTGTCTCCATCTTTTCTCGAAAAGCAATTCCGTGATGCTTGCCACGTATTGTCTATCGAGGCGCCACCCAGGAATTCCATCATTTTTAAGGTGGAATACGTTGCACATGTCAAGGATGCCGAGACAACGATGCAAAGAGCAATAAACGATTACAGGAATGAACACAATGGGCCTACAGTTGCTGTTATTGAATGTCCAAATCCTCAACTAATGAAATTGGGTATACGAGCTCTGGATGACTTCCCCTGCCTGAACATTCCTTCTAATGCACGTGATAGTAAGTACCAGGTTCTTGGGTGGCAACAAGTTGCTGCAAGAATTGGAATGCAACGTTCTGCTGCGTCAGTCCAGTGGCTAAATGAAAGGATCGCTCTCTCAAGATATGCTCATGTGCCGCTGGGAAATTTTGAACTTGACTGGCGTATATTTACCTTGGATATCTTCTTTTCAAGAGCATTGCGCGATAACCAACAGGTACTTTGGATATCCGATGATGGTCTTCCAGATTTAGGTGGTACTAATGAAGAAGAGACGTGTTTTGCTGATGAGGTCCATCAACCTGTTCTGACCTATCCTGGAGCTTACAGGAAAATTACTATAGAGCTTAAGATTCACCACTTGGCTGTTAATGCCCTTTTGAAGAGCAACCAAGTTAATGAAATGGAAGGAGGTGCTCTGTTAGGATTTGACGACGACTTTAGTTCTGGAGCACTTGGCATAAATGATCACAATGGCTATGATGAATCCACCTCATGTGCACATGCCTTTAGAGTCCTAAAACAGTTGATCCAAAGGTGCCTTGCAGATGCAGTCACTTCTGGGAACGTATATGCTGATGCAATATTGCAGCATCTATATCGATGGCTTTGCAGTCCTCAATCAAAACTTCATGATCCATCTCTTCACCAACTACTTCACAAGGTCATGCACAAGGTTTTTGCATTATTGTTGGCAGAGTTTCGCAAGTTGGGTGCAAATATTGTGTTTGCAAACTTCTCAAAGATCATTTTAGACACAGGAAAATACGATCTATCTGCGGCCAAAGCTTACTGTGATAGTTTGTTGAAAACTCTACAATCTAGGGATCTATTTGAATGGATTGAGCTTGAACCACGGAAGTACTGGCACTCATTACTTTTCATGGATCAGTATAACTATGGCGGAATACCAGAAAAATCTGATGAAGTTATAACTGAGACATCTAAAGCCGAGATCGAAGCGGATTGGAACATGGCGAACAATTTACCACATGAGATTCAGgatcattttcttttgattgtttcTGAGTTCATGTATGTACCGTGGAAGTATACACAAAAACAAGCTGGAATTAGGGCTTCATCACAGAATGGCGATTTCTGCACGCCATCAATTACTATTGGAACTGCAGAGGCTTTTGAATCACATATAACAGAATATATTAAAGGCCAGATCAGCTCTTATTTCACGGATAAACTTCTGGGAACTGTCCGTGACATTGTTCTTTATATGAAGGAGATAAAGAAATCAGAAAATGCCCAGAATATGTCTTCTGGCCTTCCCCAACTTGCCGGAGATTTCCATAGAGGGGATGCGGCCTTGGAGTTTATCAAGCATGTCTGTGCTGTCCTAGCTCTCGATCATAATGTGCAGCATGATGTTTTGGTGATGCGAAAGAATCTGCTCAAATACGTTCGTGTCAGAGAGTTCGCTCCAGAAGCTGAGTTTCGCGATCCAGACCCTTCTTTCATCTTACCGAACGTCATCTGCAGCTATTGTAATGACTGCAGAGACTTGGACTTGGATCGTGTTACTACTTTAATGACCGAGGAGTGGCGATGTGCGGTAGAACAGTGTGCTCAGCCTTATGACAGAGAGGTAATGGAGAACGTTCTCCTTCAGGTCGTACGGCAGAGAGAACGTCTATACCACCTGCAGGACCTAGTGTGTCTCAGATGCAACCAGGTGAAAGCTGCACATTTGGCTGAGCAATGCGCATGTGCCGGCTCATTTAGGTGCAAAGAAGATATATCTGAATTTCGCTCAAAGATGCaggttttcttaaaaatagcTGTTCATCAGAAGTTCCAACTTCTCCAAGAATGCACTTCGTGGATTCTAGAACTTAGATA 6638 0.4086 MNGESRRRDRDRRDPRRSKKQKLLRTAEEELESKLGFDLFSEGEKRLGWLLNFASSSWEDEETQKVYSCVDLYFVTQDGSTFKSKYRFRPYFYAATKDKMEMDVEAYLRRRYESQIADVEIVEKEDLDLKNHLSGLQKSYLKLSFDTVQQLMNVKSDLMHVVERNQAKSDTAEAYESILTIRREQKPQDFLDCIVDLREYDVPYHVRFAIDNDVRCGQWYDVSVSSTGVALEKRTDLLQRAEVRICAFDIETTKLPLKFPDADYDMVMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPEFEGCFKVTNVLNEVELLKLWFSHMQDVKPGIYVTYNGDFFDWPFLESRATHHGFKMSDELGFQCDKGQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYFLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYHSHLLESETYIGGHVECLESGVFRSDLPTSFTLEPSAYEQLINNLDRDLQYAIRVEGKMDLESVCNYDEVKNAIIEKLVKLRDEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMAKRSDYYHLKKQIESEFVDSADGRSSKSFLDLPKSEQQLRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKLTISYPCVMLNVDVARNNTNNQYQTLTDPIRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSTVASVANGWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGDQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVACEPKGTPVSERAVPVAIFETDTEVMKFYVRKWCKVSSDVGIRSIIDWSYYKQRLSSAIQKIVTIPAAMQKVANPVPRVVHPDWLYKKVREKEDKFRQRKLVDVFNSMSRDIQSKRHGDSNNTSHVMDGDLEDFGNKSKSSITGPRPIIRHYEANSELHSVKCNGQVDSEQHHYDNSSKRQPVAQSQEIEISSEDVDRTVDYQGWLKMKKRKWKFILEKRKKQRLDKLKRSARVNGVLENPSGMVDHAAQGRNNVGSYFRRHEVALTQCYWQIIQLVNGSQNTQFFAWVLVDGVMLKIPVSVPRVFYLNSKSPITEEFLGKRVSKTLPHGRHTYNLYEVTITEVQFREASKKTEALLADPDVEGIYETKVPLEYNAIVQLGCVCKVDKTAKKRGLQDPWCLSELHMKTTTECAYLEQSISFFYLYHSISEGRAIYVGYFPASKTISVVVVNPYQNKDLSPSFLEKQFRDACHVLSIEAPPRNSIIFKVEYVAHVKDAETTMQRAINDYRNEHNGPTVAVIECPNPQLMKLGIRALDDFPCLNIPSNARDSKYQVLGWQQVAARIGMQRSAASVQWLNERIALSRYAHVPLGNFELDWRIFTLDIFFSRALRDNQQVLWISDDGLPDLGGTNEEETCFADEVHQPVLTYPGAYRKITIELKIHHLAVNALLKSNQVNEMEGGALLGFDDDFSSGALGINDHNGYDESTSCAHAFRVLKQLIQRCLADAVTSGNVYADAILQHLYRWLCSPQSKLHDPSLHQLLHKVMHKVFALLLAEFRKLGANIVFANFSKIILDTGKYDLSAAKAYCDSLLKTLQSRDLFEWIELEPRKYWHSLLFMDQYNYGGIPEKSDEVITETSKAEIEADWNMANNLPHEIQDHFLLIVSEFMYVPWKYTQKQAGIRASSQNGDFCTPSITIGTAEAFESHITEYIKGQISSYFTDKLLGTVRDIVLYMKEIKKSENAQNMSSGLPQLAGDFHRGDAALEFIKHVCAVLALDHNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPDPSFILPNVICSYCNDCRDLDLDRVTTLMTEEWRCAVEQCAQPYDREVMENVLLQVVRQRERLYHLQDLVCLRCNQVKAAHLAEQCACAGSFRCKEDISEFRSKMQVFLKIAVHQKFQLLQECTSWILELR 2212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00368 2212 Gene3D DNA Polymerase, chain B, domain 1 57 233 - -
Bva09g00368 2212 SMART DUF1744_2 1514 1898 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Bva09g00368 2212 MobiDBLite consensus disorder prediction 1 25 - -
Bva09g00368 2212 SMART polmehr3 241 844 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bva09g00368 2212 CDD POLBc_epsilon 506 1123 - -
Bva09g00368 2212 Pfam Domain of unknown function (DUF1744) 1531 1898 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Bva09g00368 2212 CDD DNA_polB_epsilon_exo 242 445 - -
Bva09g00368 2212 Gene3D Palm domain of DNA polymerase 753 938 IPR023211 -
Bva09g00368 2212 SUPERFAMILY DNA/RNA polymerases 488 1116 IPR043502 -
Bva09g00368 2212 SUPERFAMILY Ribonuclease H-like 61 469 IPR012337 -
Bva09g00368 2212 MobiDBLite consensus disorder prediction 1221 1240 - -
Bva09g00368 2212 Gene3D - 942 1126 IPR042087 -
Bva09g00368 2212 MobiDBLite consensus disorder prediction 1164 1197 - -
Bva09g00368 2212 Gene3D - 240 470 IPR036397 GO:0003676
Bva09g00368 2212 Pfam DNA polymerase family B 758 1071 IPR006134 GO:0000166|GO:0003677
Bva09g00368 2212 Pfam DNA polymerase family B, exonuclease domain 76 402 IPR006133 -
Bva09g00368 2212 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 34 2209 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00368 Bva-Chr9 1958282 1980216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00368 1 2102 Core DNA Replication Machinery Family AT1G08260 71.537 0.0 3092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00368 K02324 - qsu:111996722 3752.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00368 09 1958282 1980216 Bva09g00368 09 1958282 1980216 ECH