Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00366 ATGGAAGAACCTCAAAACGGTGGTAATGTTAACTCGGCCGTGGCGGAAACAGAGGAGGCGGCTATGATCGGACCGGGGCCAGCCCCTCGCTCTCGACCCAAACGTCCCCTACAGTTCGAGAAGGCCTACCTCGACGCTTTACCCTCCGCCAACATGTACGAGAAAAGTTATATGCATCGTGATGTTGTTACACATGTTGCTGTTTCAACTGCAGATTTTTTCGTGACTGGAAGCAGTGATGGTCATTTGAAGTTTTGGAAGAAAAGGCCTGTTGGGATCGAGTTTGCAAAACACTTTAGATCCCATCTTGGTCCAATTGAAGGCCTCGCTGTTAGTCATGATGGCTTGCTTTGCTGTACAATATCAAATGATCGTTCAGTGAAAGTATATGACGTAGTCAACTTTGACATGATGGTTATGATTGGCTTGCCATATGTTCCTGGTGCTGTTGAATGGGTTTACAAACAAGGGGATGTCAAAGCAAAGCTTACCGTTAGTGATAGAAACTCATCTTTTGTTCACATATATGATGCTCGATCTGGTTCAAATGATCCTATCATATCTAAAGAGATACATTTGGCCCCTATAAAAGTCATGAAGTACAGTCCTGCATATGATTCTGTGATCTCAGCTGATACAAAGGGGATAATTGAATACTGGAACCCTACTACACTTCAATTTCCAGAGGATAAGGTGAACTTTAAACTGAAAAGTGATACCAACCTTTTTGAAATTGCTAAATGCAAGACTTCAGTTTCAACTATCGAGGTCAGCTCAGATGGTAAACAATTTTCCATTACATCACCTGATCGTAGGATACGTGTATTTTGGTTCAGAACAGGAAAACTAAGGCGAGTTTATGACGAATCCCTGGAGgTAGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATACCGGCTGGAAGCCATTGATTTTGGCCGAAGAATGGCTGTCGAAAAGGAAATAGAGAATACAGAAACTGCTCCACAACCCAACGCAGTTTTTGATGAAAgttctaattttcttatgtATGCGACCTTGCTTGGGATAAAAATAGTGAATTTGCACACCAATAAAGTTGCTCGAATACTTGGAAAGCTGGAGAACAATGATAGGTTCCTAAGAATTGCTTTGTATCAAGGTGATCAAAGCAGTAAGAAAGTAAGAAAGATTCCTGCAGCATCTGCCAATGTAAATGAGAGCAAGGATCCTTTGACGGATCCCACTCTTTTGTGTTGTGCTTTCAAAAAGCACAGGATATATTTATTCAGTCGGAGAGAACCTGAGGAGCCTGAAGATGCGACTAAAGGAAGAGATGTATTCAATGAAAAGCCCCCCGCTGATGAACTTTTGGCTGTTTCAGATATTGGAAAGGCAGTTACAACGTCACTTCCTGACAATGTGATTCTGCACACTACTATGGGTGACGTCCACATGAGATTATACCCAGAAGAGTGTCCAAAAACTGTGGAGAACTTCACAACTCACTGTCGGAATGGCTATTATGACAATCTTATATTTCATCGGGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTGGGAGATGGTACTGGTGGGCAATCTATTTGGGGGAGGGAATTCGAAGATGAATTCCACAaaagCTTGAGACATGATAGGCCTTTCACGGTGTCAATGGCCAATGCGGGACCAAATACAAATGGTTCTCAGTTCTTTATCACCACAGTAGCTACTCCTTGGCTGGACAACAAGCACACTGTATTTGGTAGAGTTGTGAAAGGAATGGATGTTGTACAGTCTATAGAGAAAGTGAAGACAGACAAGACCGACAAGCCATACCAAGATGTTAAAATTCTGAATGTTACCGTACCGAAGTCTTA 1865 0.4188 MEEPQNGGNVNSAVAETEEAAMIGPGPAPRSRPKRPLQFEKAYLDALPSANMYEKSYMHRDVVTHVAVSTADFFVTGSSDGHLKFWKKRPVGIEFAKHFRSHLGPIEGLAVSHDGLLCCTISNDRSVKVYDVVNFDMMVMIGLPYVPGAVEWVYKQGDVKAKLTVSDRNSSFVHIYDARSGSNDPIISKEIHLAPIKVMKYSPAYDSVISADTKGIIEYWNPTTLQFPEDKVNFKLKSDTNLFEIAKCKTSVSTIEVSSDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIENTETAPQPNAVFDESSNFLMYATLLGIKIVNLHTNKVARILGKLENNDRFLRIALYQGDQSSKKVRKIPAASANVNESKDPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKAVTTSLPDNVILHTTMGDVHMRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQSIEKVKTDKTDKPYQDVKILNVTVPKS 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00366 621 CDD cyclophilin_WD40 469 616 - -
Bva09g00366 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 507 519 IPR002130 GO:0000413|GO:0003755
Bva09g00366 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 550 565 IPR002130 GO:0000413|GO:0003755
Bva09g00366 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 578 593 IPR002130 GO:0000413|GO:0003755
Bva09g00366 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 481 496 IPR002130 GO:0000413|GO:0003755
Bva09g00366 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 565 577 IPR002130 GO:0000413|GO:0003755
Bva09g00366 621 Pfam WD domain, G-beta repeat 97 131 IPR001680 GO:0005515
Bva09g00366 621 Pfam WD domain, G-beta repeat 63 87 IPR001680 GO:0005515
Bva09g00366 621 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 464 618 IPR002130 GO:0000413|GO:0003755
Bva09g00366 621 Gene3D - 456 621 IPR029000 -
Bva09g00366 621 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 468 618 IPR002130 GO:0000413|GO:0003755
Bva09g00366 621 Gene3D - 45 298 IPR015943 GO:0005515
Bva09g00366 621 SUPERFAMILY Cyclophilin-like 465 618 IPR029000 -
Bva09g00366 621 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 87 IPR001680 GO:0005515
Bva09g00366 621 SUPERFAMILY WD40 repeat-like 61 284 IPR036322 GO:0005515
Bva09g00366 621 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 502 519 IPR020892 GO:0003755|GO:0006457
Bva09g00366 621 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 15 619 - -
Bva09g00366 621 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 15 619 IPR044666 -
Bva09g00366 621 SMART WD40_4 238 277 IPR001680 GO:0005515
Bva09g00366 621 SMART WD40_4 92 131 IPR001680 GO:0005515
Bva09g00366 621 SMART WD40_4 50 87 IPR001680 GO:0005515
Bva09g00366 621 SMART WD40_4 182 221 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00366 Bva-Chr9 1947728 1953910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00366 468 618 U-box Gene Family AT5G67530 47.020 1.97e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00366 K12736 - qsu:111996721 1158.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00366 09 1947728 1953910 Bva09g00366 09 1947728 1953910 ECH