Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00356 atggatTTTGAGAAAGAATCTTCatctctatctctatctccGTCTTCGTCTTCGTCTCCTTGTCTGTGTCAACTATCACCGTGCTCAACGACCAACCATGAGCATTCATCTTCTGATTCACAATTATTAGTTACATCTCAGAAGAGAAAAGCAGGAAGAAAGAAGTTCCAAGAGACTCGGCATCCCGTGTATCGGGGCGTTCGGCAAAGAAATGGAGACAGATGGGTTTGTGAAGTCAGGGAACCAAACAAGAAGTCAAGAATATGGCTGGGCACTTATCCTACCCCGGAAATGGCAGCTAGGGCACATGACGTGGCTGCACTAGCACTTAGAGGTAGCTCAGCTGTGCTTAATTTTACTGACTCAGCAGATCTTCTGCCAGTTGCAAGGTCATCTTCACCCGAAGATATAAGAGCTGCTGCATCAAAAGCTGCTGAGGCTTTTAGATCAACCAGCTCTTCTTCCTCTATGAGCATACATGTAGAGGGTTCATTGTCAACGGATGatcttaataaaatcaaagggAAAAATGATCATGTAGAGAGTGAAAAGGTTTTGGAGGGTTCATTGCCAGTGgatgattttaataaaatcaccGGGAAAATTAATCATAGTAATGTTGATCAGTCTTCACAGCCATTTTTGGATGAGGAGGCTATGTTTAATGAGTTGGGGTTTTTAGATAGAATGGCAGAGGGATTGTGTCTTACCCCACCGTCTATGGAAAGAGCATTTGATTGGGACGACAATATTGCTTGTGACATGGACTTTTCTTTGTGGAGACACTG 788 0.4061 MDFEKESSSLSLSPSSSSSPCLCQLSPCSTTNHEHSSSDSQLLVTSQKRKAGRKKFQETRHPVYRGVRQRNGDRWVCEVREPNKKSRIWLGTYPTPEMAARAHDVAALALRGSSAVLNFTDSADLLPVARSSSPEDIRAAASKAAEAFRSTSSSSSMSIHVEGSLSTDDLNKIKGKNDHVESEKVLEGSLPVDDFNKITGKINHSNVDQSSQPFLDEEAMFNELGFLDRMAEGLCLTPPSMERAFDWDDNIACDMDFSLWRH 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00356 262 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Bva09g00356 262 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Bva09g00356 262 MobiDBLite consensus disorder prediction 1 47 - -
Bva09g00356 262 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Bva09g00356 262 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Bva09g00356 262 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F-LIKE 1 261 - -
Bva09g00356 262 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Bva09g00356 262 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
Bva09g00356 262 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Bva09g00356 262 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Bva09g00356 262 MobiDBLite consensus disorder prediction 1 61 - -
Bva09g00356 262 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 261 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00356 Bva-Chr9 1891450 1892410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00356 29 260 AP2-EREBP Transcription Factor Family AT5G51990 44.958 1.80e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva09g00356 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00356 - - gmx:100816109 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00356 09 1891450 1892410 Bva07g02292 07 18863455 18864207 BWGD
Bva09g00356 09 1891450 1892410 Bva09g00356 09 1891450 1892410 ECH