Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00343 ATGGAGTTCTGGGGTATTGAGGTTAAGAGTGGGGAGACTGTGAAAGTCGATCCTGAGGAATTTGATGCTTACGTACATCTTTCACAGGCTGCTCTGGGGGAGTCGAAGAAAGATAGTGGAAGTGAGAAGGTGGTTCTTCATTTGAAAGTTGGTGACCAGAAGCTTGTTTTGGGAACACTTTCTAGGGAAAATTTTCCTCAGCTGTCTTTTGATATCGTCCTTGATAAGGAATTTGAGCTCTCTCATAATTGGAAAAATGGGAGTGTCTACTTCTGTGGATACAAAGCTGAAGTGCCAGATGAGGAGGATGACTTCGATGATGAGAGTGATGATGACGAGGATCTGCCAATGATCTCCCTAGACAATGGAAAACTTGACACAAAGACTGAAGTTGGGGATggtaaacttaaaaaatctGCTGCCAAGGGTCCTTCAGTGAATCAAGTCAAGGTTGCTGATTCAAAGAAAGATGAAGAGGAAGACTCAGAAGATGATGAttctgatgatgatgattctGACGAAGAAGATGATGGTGGAAGTTCTGAAGAGGACAAGATGGATGCTGATAGTGATagtgatgaagatgatgaagagaCACCTAAGAAGGCATACCAGGGCAAGAAAAGACCCAATGATTCTGCAACAAAAACTCCTATCTCTTCCAAGAAAGCTAAAGCTGCTACTCCACAAAAGACTGATGGTAAGAAAGGTGGTCATACAGACACTCCTCACCCTAAGAAGGACATAAAGACTCCGAACAGTGACTCTAAATCTGGTGGAAAATTCTCCTGCAAGTCCTGCAGCAAGTCTTTCAACTCTGATGCTGGCCTGCAGCAACATTCAAAGGCTAAGCATGCTTG 860 0.4105 MEFWGIEVKSGETVKVDPEEFDAYVHLSQAALGESKKDSGSEKVVLHLKVGDQKLVLGTLSRENFPQLSFDIVLDKEFELSHNWKNGSVYFCGYKAEVPDEEDDFDDESDDDEDLPMISLDNGKLDTKTEVGDGKLKKSAAKGPSVNQVKVADSKKDEEEDSEDDDSDDDDSDEEDDGGSSEEDKMDADSDSDEDDEETPKKAYQGKKRPNDSATKTPISSKKAKAATPQKTDGKKGGHTDTPHPKKDIKTPNSDSKSGGKFSCKSCSKSFNSDAGLQQHSKAKHA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00343 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 286 IPR013087 -
Bva09g00343 286 MobiDBLite consensus disorder prediction 101 286 - -
Bva09g00343 286 MobiDBLite consensus disorder prediction 158 196 - -
Bva09g00343 286 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 283 - -
Bva09g00343 286 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Bva09g00343 286 Gene3D Nucleoplasmin core domain 1 100 - -
Bva09g00343 286 MobiDBLite consensus disorder prediction 255 279 - -
Bva09g00343 286 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Bva09g00343 286 MobiDBLite consensus disorder prediction 228 254 - -
Bva09g00343 286 MobiDBLite consensus disorder prediction 101 116 - -
Bva09g00343 286 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 283 - -
Bva09g00343 286 MobiDBLite consensus disorder prediction 210 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00343 Bva-Chr9 1790647 1795278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00343 1 286 C2H2 Transcription Factor Family AT5G03740 40.625 6.01e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva09g00343 NPL 8.3e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00343 - - lang:109358867 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00343 09 1790647 1795278 Bva07g02303 07 18922215 18925050 BWGD
Bva09g00343 09 1790647 1795278 Bva09g00343 09 1790647 1795278 ECH