Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00337 ATGGGGAACAAGGTAACGGATGAATTATTGTCCACCGTTCGATCCATTGTTGGTTCGGAATATACTGACATGGACATCATCAGAGCTGTACACATGGCCAACAACGACGCCACAGCCGCCATTAACATCATATTTGATACCcccaatttcaaattcaaagagaGATCAGGCACTAAGAGAAGTCCCCAAGTTTCTCAGAGAAGTAGCCCGGATACTGCAACTGGTTCCAAGAAGTCCGAGCAGCCAAGATCGAGCTCTAATACAACAACTGTTATTGAGAAATTAGAACAAAATGGTAAAGAGCACATTGATTGCTATGGGTCGGAGGCAAATGCTGCTGACTGCATTATTAACTCAGACGATGCTGCTATGGGCGAAGTGAGGGGGCGTTCTGATTTTGCCGGAATTGATTGGTGGTTTGTGGGTTGTGGTGAACTGGCTGGATTGTCGACCTGCAAAGGGAGGACTATCAAGCCTGGGGATGAAGTATCTTTTAAGTTTCCGTTCAAGACAGCTGTTGCTTCACCCTCCCTGGGCAAGGGGTTTGGACGGGGACGACAGTCGGCAGCGACTTGTTCAGAGATAGTGAGATTCTCTACCAAAGAACAGGGAGAGATTGGTAGAATACCAAATGAGTGGGCTCGGAGTCTCTTGCCTCTTGTGCGGGATAAAAAAGTTAGGATTGAGGGGCGTTGTAAATTTGCTCCTAATGTTTTGGGCATTATGGACACCATTCTTCTGTCTATTAGTGTATTCATAAATAGTTCAATGTTTCGTAAGCATCACAAGGTTTCTCTTAAGGATGCCACAAATTCCTCCGATGAATCAATGTTTCATCCTCTCCCAACCTTGTTTCGGTTGCTAGGCATGAACCCTTTTAAGAAGGCAGAGTTTACCCCTGGTGATTTGTATACAAAGAAGCGCCCTTTAAACCAAAAGGCCACATCACTAAACATCAAAGCTAAGCATCCTTTGCAGAATGGTACTGACATTGACAGTGAGGAGTCAATCTCTGAAACAGATGTTGAAAACATTgttggtgttggggccagctCAGATTTAGAGGAAATGGATCCCCCAAGTAACCTTCAGTGTGAACTGCGGCCCTACCAAAAGCAGGCTCTTAATTGGATGATCCAGTTGGAGAAGGGACGACCTGTGGATGAGGCAGCAACAACTCTTCATCCATGTTGGGAGGCATATCGACTGGCTGACAGGAGGGCGCTTGTTATCTATTTGAATGCATTTTCTGGTGAAGCTACAGTAGAATTTCCTAGCACACTTCAAATGGCTAGAGGAGGAattttggCAGATGCTATGGGGCTTGGCAAGACCATTATGACCATAGCCCTACTCCTTACTCATTCAGGAAGAGGTGGATCAGTGGGCAGTCAATCCATAGCTGACCCTGTCAGTGAAGGTTGTGAAGTTAGTGATACAGCACACAACTTTTCAAGCATGCCAAAGAAGGCAACAAAGTTTTCAGGTTTTGATCAACTAATGAAGCAAAAGAATGTTCTAACAAGTGGTggcaatttgattatttgtCCCATGACTCTTCTGGGGCAGTGGAAgGCAGAGATTGAAACTCGTGTGCAGCCTGGGTCTCTGTCTATCTATGTGCATTATGGACAAAGTAGACCAAGAGATGCAAAAAATTTAGCCCAGAGTGATGTTGTAATTACCACATATGGAGTCTTAGCCTCTGAATTTTCCAGTGAGAGTACAGAGGACAATGGTGGACTTTTTTCAATTCTGTGGTTTAGAGTGATTCTTGATGAGGCACATACTATAAAATCTTCCAAAAGCCAAATTTCTATGGCAGCCACTGCTTTGGTTGCTGACCATCGTTGGTGTCTTACTGGCACTCCTATCCagAACAACCTTGAGGATGTTTACAGTCTTCTTCGATTTCTGAGGATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAGACTCATTCAGAAACCATTTGAGGAGGGTGATGAGAGAGGGTTGAAGTTGGTTCAATCCATTTTGAAGCCAATCATGTTGAGGAGGACTAAACATAGCACAGATCGAGAGGGCAAGCCTATCTTAGTTCTGCCCCCAGCAGATCTGCAGATAATTTACTGTGAGCTCTCTGAAGCTGAAAAAGACTTTTATGAGGCGCTATTCAAAAGATCTAAGGTCAAGTTTGATCAATTTGTGGAGCAGGGGCGTGTTCTCCATAATTATGCTTCGATATTGGAGTTGCTTTTACGTCTTCGGCAGTGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAGGAATTTGCTGATCTAAACAAACTAGCTAAGCGTTTTCTCAAAGGGGAATCAAAAGATGCACCCTCACGGGCTTATGTTCAAGAAGTTGTGGAAGAACTACGAAAGGGGGAAGAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTACTAACACCTTGTGCTCACCGCTTATGCCGTGAATGCCTCTTGGCAAGTTGGCGAAATTCTACTTCTGGTCTATGTCCTGTTTGCAGGAAAATGGTCAGCAGGCAAGATCTTATCACCGCCCCGGCTGAGAATCGATTTCAAATTGATATTGACAAGAACTGGGTGGAATCATGCAAAGTAACTGCTCTTTTGCATGAACTTGAAAATCTTCGTTCATCATGTTCTAAGAGCATTGTCTTCAGCCAGTGGACTGCTTTTCTAGATCTCCTGCAGATTCCTTTTAGCCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTTTGAATCAGCAACAGCgtgaaaaagtaattaaacaaTTCTCCGAAGATAGCAACATCATGGTCTTGTTGATGTCACTAAAAGCTGGTGGAGTGGGGATAAATCTAACAGCAGCTTCAAACGCGTTTGTCATGGATCCGTGGTGGAATCCAGCTGTAGAGGAACAAGCTGTTATGCGTATTCATCGTATTGGACAAACAAAGAAGGTGGCAATCAAACGGTTTATCGTAAAGGGAACAGTTGAGGAGAGAATGGAGGCCGTGCAAGCGCGTAAACAGCGAATGATTTCTGGTGCCTTAACTGATCAAGAAGTTCGAACTGCACGAATTGAGGAGTTAAAGATGCTTTTTACTTA 3128 0.4306 MGNKVTDELLSTVRSIVGSEYTDMDIIRAVHMANNDATAAINIIFDTPNFKFKERSGTKRSPQVSQRSSPDTATGSKKSEQPRSSSNTTTVIEKLEQNGKEHIDCYGSEANAADCIINSDDAAMGEVRGRSDFAGIDWWFVGCGELAGLSTCKGRTIKPGDEVSFKFPFKTAVASPSLGKGFGRGRQSAATCSEIVRFSTKEQGEIGRIPNEWARSLLPLVRDKKVRIEGRCKFAPNVLGIMDTILLSISVFINSSMFRKHHKVSLKDATNSSDESMFHPLPTLFRLLGMNPFKKAEFTPGDLYTKKRPLNQKATSLNIKAKHPLQNGTDIDSEESISETDVENIVGVGASSDLEEMDPPSNLQCELRPYQKQALNWMIQLEKGRPVDEAATTLHPCWEAYRLADRRALVIYLNAFSGEATVEFPSTLQMARGGILADAMGLGKTIMTIALLLTHSGRGGSVGSQSIADPVSEGCEVSDTAHNFSSMPKKATKFSGFDQLMKQKNVLTSGGNLIICPMTLLGQWKAEIETRVQPGSLSIYVHYGQSRPRDAKNLAQSDVVITTYGVLASEFSSESTEDNGGLFSILWFRVILDEAHTIKSSKSQISMAATALVADHRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNRLIQKPFEEGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADLQIIYCELSEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLKGESKDAPSRAYVQEVVEELRKGEEGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRKMVSRQDLITAPAENRFQIDIDKNWVESCKVTALLHELENLRSSCSKSIVFSQWTAFLDLLQIPFSRNNISFVRLDGTLNQQQREKVIKQFSEDSNIMVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00337 1042 MobiDBLite consensus disorder prediction 61 90 - -
Bva09g00337 1042 SMART ultradead3 363 661 IPR014001 -
Bva09g00337 1042 Pfam SNF2-related domain 370 758 IPR000330 GO:0005524|GO:0140658
Bva09g00337 1042 ProSitePatterns Zinc finger RING-type signature. 822 831 IPR017907 -
Bva09g00337 1042 CDD DEXDc_SHPRH-like 367 680 - -
Bva09g00337 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 858 IPR013083 -
Bva09g00337 1042 MobiDBLite consensus disorder prediction 54 90 - -
Bva09g00337 1042 CDD SF2_C_SNF 873 1000 - -
Bva09g00337 1042 PANTHER DNA REPAIR PROTEIN RAD5 133 1042 - -
Bva09g00337 1042 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 133 1042 - -
Bva09g00337 1042 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 425 642 IPR014001 -
Bva09g00337 1042 SMART HIRAN_2 141 253 IPR014905 GO:0003676|GO:0008270|GO:0016818
Bva09g00337 1042 ProSiteProfiles Zinc finger RING-type profile. 807 847 IPR001841 -
Bva09g00337 1042 Gene3D - 696 1042 IPR027417 -
Bva09g00337 1042 Gene3D - 423 692 IPR038718 -
Bva09g00337 1042 SMART helicmild6 906 989 IPR001650 -
Bva09g00337 1042 SMART ring_2 807 846 IPR001841 -
Bva09g00337 1042 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 877 1042 IPR001650 -
Bva09g00337 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 1031 IPR027417 -
Bva09g00337 1042 Pfam HIRAN domain 142 249 IPR014905 GO:0003676|GO:0008270|GO:0016818
Bva09g00337 1042 SUPERFAMILY RING/U-box 793 853 - -
Bva09g00337 1042 Pfam Helicase conserved C-terminal domain 878 989 IPR001650 -
Bva09g00337 1042 Pfam Zinc finger, C3HC4 type (RING finger) 804 851 - -
Bva09g00337 1042 CDD RING-HC 807 846 - -
Bva09g00337 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 680 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00337 Bva-Chr9 1752940 1760089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00337 1 1042 RAD5 or RAD16-like Gene Family AT5G22750 70.500 0.0 1511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva09g00337 SNF2_N 1.1e-86 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00337 K15505 - gmx:100794452 1607.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00337 09 1752940 1760089 Bva09g00337 09 1752940 1760089 ECH