Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00336 ATGGAGCCCCCAGTTATCAGATCGAGGGGTCGGCCAAGGAAACggagaaaagaagatgaaagtgGGACTGATGATCCAAGATCGGGCCCTGAAATGAAAAAGCAAGTAGTTGAGACAAGGCCAATAGCATTGGTTGGGCGATATGTACTAAAAGAGTTCAACCGAACTGGGATTTTTCTCGGGAAAGTTGTATATTATGATTGTGGATTATACAGAGTCCATTACGAGGATGGAGATTATGAAGATTTGGATAGCAGTGAGATTCGCGGAATACTCCTTAATGACcattattttgatgatgattTGACTCAAAGGAGGAGGAAATTGGATGAATTAGTGTTGAAGAATGGCCTCAATATAAAAAAGGAGCAGAAGAGTTCTGTTGATCCAAATAATGGTGTATCGAGTGAATTGCATGGTGGGTTGTCAACTGAAAACGTGGTGCAAGTTGAAGGGGATGCTGATTCATCAAGTGATTCGAGTGTGTGTTCTAAGGAAAGGGATTCTGGGTCTGATGCGGAGACATCGCCTCCACCACCATTACAGTTGCCGCCATCTTCAGGGACTATTGGTGCTCCTGAGCAGTATGTCTCGCATCTTTTTTCGGTTTATGGATTCTTGCGATCATTCAGCATTCGTTTGTTTATAAGTCCGTTTTCTTTGGATGATTTTGTCGGTTCACTTAATTGCCGAGTTTCAAACACGTTGTTTGATGCCATCCATGTTTCTCTGATGCGTGCATTGAGGCGTCATCTTGAAATGCTGTCATCTGAGGGCTCAGAGCGTGCGTCAAAGTGCCTAAGGTGCAATGATTGGAGCTTGCTAGATACATTGACTTGGCCAGTTTTTGTGATTCAGTATTTAGCAGTTCATGGATATACGAAGGGACCTGAGTGGAAAGGATTTTATGAAGAGATTTTTAACGGGGAATATTATTTGTTACCTGTAAGTAGGAAGTTAATCATATTGCAAATTCTCTGTGATGATGTCTTGGAGTCTGAGGAGCTAGAAGCTGAAATGAATATGCGGGAGGAATCAGAGGTTGGGGTGGATTATGATACAGAAGATATGATTCCTGTGGAAAATCTTGCAAGAAGAGTTCATCCCAGATATGCTAAAACTTCTGCTTGCAAGGATAATACATTTATTACAGAATCAAATCCTGTGAAGCTACCTGGTAACTCAGTTTTGGTTTCCAGAGATAGTGAAAGGAATGAGGCTGCTGATGTTGACAGAAATTGTGATGAATGTCGTCTCTGTGGTATGGATGGGACCTTGCTTTGCTGTGATGGATGTCCTTCTGCATATCATTCGAGGTGTATAGGTGTGATGAAAACGTTTATACCAGAAGGCCCATGGTATTGCCCAGAGTGCAAAATTAGTATGACAGGGTCAACAATTACAAAGGGAACATCACTTAGAGGGGCTGAAATATTTGGGATAGATTTGTATGGACAAGTCTTCATGGGTACTTGTGAGCATTTGCTGGTGTCCAATATCAACGGTGAATTTTGTCTCAGATATTACAATCAGAATGACATTCCTAATGTTCTCCAAGTCCTTTGTGCATCCCTGGAGCATAGACCTTTATATTATGGAATTTGCAAGGCAGTTTTACAATATTGGAATCTTCCAGAAAGTGCCTTGCCTCTAACTGTTACAAATCTAAACTCAGTGAATACAGAAGAGTATGCAAAGTTCTCTAGTTTAGTACTTCCTTCTTTGGGTGGAGAAGAGTGTAAAGACGGTAATTTGGTGAAGGCAGAATACACTGTAAGTACTGTGAGTGAGATTCATGGTAATAATATGGTGCCTTCTCATGATGCCTCATTTCCTATGACTGAAAGAAAGACTCCTGTCCCTATAAGCTTAAGCGACACTAAGATTCAGGAGTTCCCTATGATGAATACTAAGCATCCTGAAGAAACTATGATGGAGTCTGTCATCCCAGCTGGTTCTGTTATCCATCAGGGTGAACTTTCTGGCATGAACTACCAAAGTTCTCTTGATAGATCGAGTGCAGCAGATCCTGCTATGTGCACTTTGCTAAACGGCCGTTTTAGTTATTGTCGGTATGCAAATGATATGAGATTTCCTATGAATTTGTCCTCGCAAATCAAGGAAGGCAACCGCACTGGTTCTGGAAAAAGTGAACACAATTTAACTAGTGATTTTGTATACATGGGTTCCTCATATAAACCTCAGACATACATTAACTACTATGTGCATGGTGATTTTGCTGCATCTGCTGCTGCTAAATTGGCTGTTCTTTCTTCAGAGGATTCCAGGGCAGAAGGTCATGTGTCAGAGAATCTTAAGAAACCTACATCGGGAAACACTTATTTGCAAGCAAAAGCATTCTCACTAACAGCTTCACGTTTCTTTTGGCCAAGTTCTGAAAAAAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGTCTTTCTTGTAAAGCACCTGTTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCCATAAGTGCCACCAAAAGTGCTACGAAAATCCTTGCTGGTCTTTGTCCTGTAAGGAGTGGAGAGGGAATACTTCCTAGCATCGCAacatacattatatatatggagGAAAGTTTACGTGGTTTAGTAGTTGGGCCCTTTGAAAGTGCAAGCTACAGAAAGCAGTGGCGCCAACAAGTGGAACAGGCCACAACATTCAGGGCTATAAAGCCCCTTTTGATTGAACTTGAGGAGAACATTCGTACAATTACTTTTACTGGGGACTGGGTCAAGTTGATGGATGATTGGTTGGTTGAATCTTCAATGTTTCAAAGTCTTGCACGTGCTGTTGGACCAACACAAAAACGCTTACCTGGGAGGCGCAATAAGAAACAGTTAGCTATTGATGAAGTTACAGCTGATGGTTGCAACGAGAACAACTTTGCCTGGTGGCATGGTGGGAAATTCACTAAGTTTATATTTCAGAAAGCAGTCTTACCAAAATCCATGATCAGAAAAGCAGCTCGCCAAGGTGGGTGGaccaaaatttttgaagttttctaTGCTGATGGCTCTGAAATTCCTAAAAGAAGCAGACAGCTAGTTTGGAGAGCTGCAGTACAAATGAGTAGGAATGCATCACAACTTGCTCTTCAGGTCAGATACCTAGATGTTCATCTTAGATGGAATGATCTGATTCGTCCTGAGCAGAACCTTCAGGATGGAAAAGGTCAAGAGACTGAAGCTTCTGCTTTTAGAAATGCAAATATTTGTGATAAAAAGGTTTTAGAGggcaaaattttatatggaaTTGCTTTTGGGAGCCAAAGGCATCTTTCTTCTCgtgttatgaaaaatattattgaaatagaGCAAGGTCCAGAAGGAAGGGAAAAATATTGGTTTTCTGAAGCACGCATTCCTTtatatttggttaaagaatatGAAGAAGGTATAGATAAAGTGCCATTTGAGAAAGGGCAGTTGAATTTGGCATCTCAGTTGAATCAAAAGCGGTTGAAAGCTCCCTGCaaggatatatttttttacctcATCTGCAAGAGAGACAAATTGGACATGTCATCATGTTCTGTATGTCAGCTTGGCGTTTTAATTGGGAATGCTCTCAAGTGTGGTGCATGTCAAGGCTATTGTCATGAGAGCTGTTCTGTAAGTTCAACAATCTCTACAAATCAGGAAGTCAAGTTTTTGTCCACATGCAAACAATGTTATAATGCCAAATTACTTACTCAAAAAGTTACCAGTAATGAATCTCCAACAAGTCCTTTGCTCTTGCAACGACGAGAACATGGCTCAATCACAGTTTTGAAGGGACCGAGGCCGAAATGTTATGATCAAACCTTGACATCTACCAGGACAAAGGATACTCGTCCTGACATGAAACTAGGTGCTTCTGATTCTGTTGTGGCAACAAAACCACAACGGAGAAATTGCTCTTGGGGTATTATAtggaaaaggaagaacaaTGATAATACAGGCATTGAATTTAGGCTTAAGAACATACTTTTGAAGGGAGGTCGCAGTGTGCCTCATCCGGAACCTGTTTGTCACTTGTGCCGTAAGCCATATAGGCCTGATTTGATGTATATTTGCTGTGAGACATGCAAAAATTGGTATCATGCTGAAGCTGTTGAGCTTGAGGAGTCAAAAATTTCGGATGTGTTGGGCTTTAAGTGTTGCAAGTGTCGTAGGATAAAATCACCTGTGTGTCCATACTCTGATTCGaagaacaaaatgaaagaggGAAAGAAGACACAGTCAAAGTCTTTAAAGAACGAACATTCTGGAGCAGATTCTGATTCTGGAATTCTTTCTGAACTGAAAGAGTGTGAGCCTGCTACCCCAGTCTTTCCTGTGGAGGATGCATCTAGACCAGATAATGACCCTctgcttttctctctttcaagAGTTGAGCTAATAACAGAACATAATGCAAAAGCCGATGTTGAGTTGAATGCTGCTTCTGTGCTAGGGCCTCGGAAACTACCAGTGAGAAGGCATGTTAAGCGTGAGGGGGATGGTGATGGTTCTTATGGAAGTAAATTTACTGGTGCTGAATTTTCAACACACTATGAAACTAGTAATCTGTCTGAACAAGCCGAGAAGGCATCATCCCCTTTTGCTGAATTTGACTCTAATGTGCATCTAGACAGCAGCGATCTGCTAAACGACTGTGAAACTGTAAATTATGAATGCATGGAGTTTGAACCCCACACCTACTTCTCTCTAAAAGAATTGCTGCCCCAAGATGATAGTAATCAGTTTGAGGGGGCTGATGCTTCTGGGGATTTGTCAGAATATTGGGGAGATTCTTGTACACAGGCAGGATTTCCTGAAGAAAGTGGAACATTTAGTTTGATAGATAACTTTGAACCTACAACCTCCTTACAAGACAATGCTTACACATGTTGGCAATGTTCACAGGTGGAACCAGCGCCTGATCTCTCTTGTGAGATTTGTGGGCTTAGGATTCACAGCCAATGTTCACCTTGGGTTGAATCACCATCTAGGATAGGAAGCTGGAAGTGTGGGAATTGCCGAGAATGGCGATG 5048 0.4023 MEPPVIRSRGRPRKRRKEDESGTDDPRSGPEMKKQVVETRPIALVGRYVLKEFNRTGIFLGKVVYYDCGLYRVHYEDGDYEDLDSSEIRGILLNDHYFDDDLTQRRRKLDELVLKNGLNIKKEQKSSVDPNNGVSSELHGGLSTENVVQVEGDADSSSDSSVCSKERDSGSDAETSPPPPLQLPPSSGTIGAPEQYVSHLFSVYGFLRSFSIRLFISPFSLDDFVGSLNCRVSNTLFDAIHVSLMRALRRHLEMLSSEGSERASKCLRCNDWSLLDTLTWPVFVIQYLAVHGYTKGPEWKGFYEEIFNGEYYLLPVSRKLIILQILCDDVLESEELEAEMNMREESEVGVDYDTEDMIPVENLARRVHPRYAKTSACKDNTFITESNPVKLPGNSVLVSRDSERNEAADVDRNCDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKTFIPEGPWYCPECKISMTGSTITKGTSLRGAEIFGIDLYGQVFMGTCEHLLVSNINGEFCLRYYNQNDIPNVLQVLCASLEHRPLYYGICKAVLQYWNLPESALPLTVTNLNSVNTEEYAKFSSLVLPSLGGEECKDGNLVKAEYTVSTVSEIHGNNMVPSHDASFPMTERKTPVPISLSDTKIQEFPMMNTKHPEETMMESVIPAGSVIHQGELSGMNYQSSLDRSSAADPAMCTLLNGRFSYCRYANDMRFPMNLSSQIKEGNRTGSGKSEHNLTSDFVYMGSSYKPQTYINYYVHGDFAASAAAKLAVLSSEDSRAEGHVSENLKKPTSGNTYLQAKAFSLTASRFFWPSSEKKLVEVPRERCGWCLSCKAPVSSKRGCMLNHAAISATKSATKILAGLCPVRSGEGILPSIATYIIYMEESLRGLVVGPFESASYRKQWRQQVEQATTFRAIKPLLIELEENIRTITFTGDWVKLMDDWLVESSMFQSLARAVGPTQKRLPGRRNKKQLAIDEVTADGCNENNFAWWHGGKFTKFIFQKAVLPKSMIRKAARQGGWTKIFEVFYADGSEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDVHLRWNDLIRPEQNLQDGKGQETEASAFRNANICDKKVLEGKILYGIAFGSQRHLSSRVMKNIIEIEQGPEGREKYWFSEARIPLYLVKEYEEGIDKVPFEKGQLNLASQLNQKRLKAPCKDIFFYLICKRDKLDMSSCSVCQLGVLIGNALKCGACQGYCHESCSVSSTISTNQEVKFLSTCKQCYNAKLLTQKVTSNESPTSPLLLQRREHGSITVLKGPRPKCYDQTLTSTRTKDTRPDMKLGASDSVVATKPQRRNCSWGIIWKRKNNDNTGIEFRLKNILLKGGRSVPHPEPVCHLCRKPYRPDLMYICCETCKNWYHAEAVELEESKISDVLGFKCCKCRRIKSPVCPYSDSKNKMKEGKKTQSKSLKNEHSGADSDSGILSELKECEPATPVFPVEDASRPDNDPLLFSLSRVELITEHNAKADVELNAASVLGPRKLPVRRHVKREGDGDGSYGSKFTGAEFSTHYETSNLSEQAEKASSPFAEFDSNVHLDSSDLLNDCETVNYECMEFEPHTYFSLKELLPQDDSNQFEGADASGDLSEYWGDSCTQAGFPEESGTFSLIDNFEPTTSLQDNAYTCWQCSQVEPAPDLSCEICGLRIHSQCSPWVESPSRIGSWKCGNCREWR 1682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00336 1682 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1679 - -
Bva09g00336 1682 MobiDBLite consensus disorder prediction 1 35 - -
Bva09g00336 1682 MobiDBLite consensus disorder prediction 1408 1427 - -
Bva09g00336 1682 SMART testlast3 194 254 IPR018501 -
Bva09g00336 1682 SUPERFAMILY FYVE/PHD zinc finger 1625 1680 IPR011011 -
Bva09g00336 1682 ProSiteProfiles Zinc finger PHD-type profile. 414 461 IPR019787 -
Bva09g00336 1682 ProSiteProfiles DDT domain profile. 194 254 IPR018501 -
Bva09g00336 1682 CDD PHD2_CHD_II 417 458 - -
Bva09g00336 1682 Pfam PHD-finger 417 459 IPR019787 -
Bva09g00336 1682 SUPERFAMILY FYVE/PHD zinc finger 404 463 IPR011011 -
Bva09g00336 1682 MobiDBLite consensus disorder prediction 152 189 - -
Bva09g00336 1682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 469 IPR013083 -
Bva09g00336 1682 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 299 341 IPR028942 -
Bva09g00336 1682 Pfam DDT domain 196 251 IPR018501 -
Bva09g00336 1682 MobiDBLite consensus disorder prediction 1408 1435 - -
Bva09g00336 1682 MobiDBLite consensus disorder prediction 13 34 - -
Bva09g00336 1682 PANTHER PHD FINGER FAMILY PROTEIN 1 1679 - -
Bva09g00336 1682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1337 1413 IPR013083 -
Bva09g00336 1682 SUPERFAMILY FYVE/PHD zinc finger 1342 1401 IPR011011 -
Bva09g00336 1682 SMART PHD_3 1347 1395 IPR001965 -
Bva09g00336 1682 SMART PHD_3 1187 1236 IPR001965 -
Bva09g00336 1682 SMART PHD_3 416 459 IPR001965 -
Bva09g00336 1682 SMART PHD_3 1634 1679 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00336 Bva-Chr9 1742299 1750043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00336 284 587 EF-hand Containing Proteins AT5G22760 46.835 1.05e-74 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Bva09g00336 DDT 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00336 - - lang:109351702 2087.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00336 09 1742299 1750043 Bva07g02307 07 18954710 18961947 BWGD
Bva09g00336 09 1742299 1750043 Bva09g00336 09 1742299 1750043 ECH