Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00315 atggctgtTGCTGGTCTGCACAATGTTTCCGTGCTTGATTCTTCTTTCCTTAGGGACTCCCATTCTCAATCATCCAGGAGGCGAGGAGACAGAGGGAGAGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGCGGTGAGTCAAACTCATGGAAGTCCTGGTGAAGGATTGCTACAACAAAGGAGTGATAGGTTTATGGATAACCTCTCACAGGCAAATATGCCTGATAGCCATGACAGAGAACAGAGGCATATTTTGGAAGATGCAGTTTTGGGTGAGAATGAGTGTGAAACATGGTCGCAGTCACAAAGTCAGAATGGGTCCCATTATGAACAGGAGGAGTCAAACAATTCCAGTTGTGAAAACTCTTCTGAGTTTGGAGAAGTTGAAAGGGAACGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCTAGTGATGATGCATCAAACATTTCACGAAGAGATAACAGAGCAAGGGCAGAATGGCTTGGTGAAACTGAGCAGGAGAGGGTGAGAGTCATAAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAGGTATTTCTTCTGGGGACAACAGAGAAGAACAACCAGCTGAAATTGGTACCCAAATTGAAAGAGTTCGTGatgtatttattgttaatcAGAGTGAGGGCCAAGCTGAGCAGCTACGGAGGGGTATTCGTAAGTTATGTGGCAGACAGGTTCTACTGGATATGCTTAAGAAGGCCGAGAGGGAAAGGCAAAAAGAAGTTCAAGAGTTGTTGGAGCACCATGTTGTATCCAATTTCTCCCATCGCAACCGCATTCAGGCATTGCTAAGGGGAAGGTTCTTGAGAAATGATATATTGATTGATAATAACAGGCCCACTTCAGTTGCAGAAAGTGAACTAGGGTTATTGAGGCAGAAACAGACCGTTTCTGGTCTGAGGGAAGGGTTTTTCTCTAGAAAGGATGGCTTTTGTTGCAGTCAAGTCACCAGCAGCACATCTGATATCTCATATAACAGTGATGTTGATGCTAATGCAAATGAACAAGCTGAAGCCAGCAGTTCACAAGTGGTCCCAATTGTATATCCTGAACAACCTGAACCTATCAACCATGGAGGTAAAGGTGATAGACTTGGGTCAACAGGTGGTCCAAGTTGTTTACAAGGAACCACAAGTGAAAATTTGGACTGGCAAGACTCAGACTCTAATGCTCATATAGAAAGAGGGCAGCAGTTGCTTTGGCCAATTGATTCAAAAGACTGGCAATCATCATCCAGTGTTGACactgaaagaagagaaggcaCTGGACAAAACGCGGATGAGTTACCAGCAGAATATACTGATAATGGATCTATGCAACAAAGTTTGCAAACTGGAGATGGAACGCATAGCAATATGCAAGATTTTACTGAGGTACATGATGAACAATTTGAGCTAGGTGATATTAGTAATGATGATAACAGTCTAGCAAATTATAGCAATCATATTGAGGACAATATCGCTGATGATGTAAATTGGAATGACTCCACTGCTCTAGAAGTTGAGTTGCAGGGTGAAGTTgttgaaaatgaaggaaacaaTTGGCAACAAACTAATGTTGAATGGAGAAACAGTATTGTTGAAAGTATGGATGACAATCAGCTCAATGAATGGCCTCAAGAAATATTGGGAAATGAAGGTGAGGAAAATTCTCATATGCAAGAAGCCCCTGCAATGTGGCAAGAAGATGGTGGCTTTCAGGAGGCTGTGGAGAATTGGTTGGGAGGACCCTCTGATCATGAAGGTGCTCCAGTTGGTAGAATTCatggattttattttcctgATGATGACAATGTGTACAGTGTGGAACTCAGGGAACTGCTAAGTAGGAGAAGCGTCTCTAACCTCCTTGGCAGTAGTTTCCGTGAGAGTCTTAACCAGTTGATACAATCATATGTTGAAAGGCAAGGACATGCTCAAGTTGAGTGGGAGCTACAAGAAACAACTCCTTCTGCTGCCTCAGTAGAGCAGGAATTGGAGCAGCAGAGTGTGGATCGGATCATTGCTCAGGGGGAAGCTGTTAACCATCCCCTTGATCTACCCTCACCACCAACACCTCCTCAGACTCTTTGGGAACGACAGTCCCGTCATGACAACTGGACACAGAATGATGTGAATAATCAACGTCTTGGAATTGAATGggatataattaatgatttgagGATTGACATGGCTAGGCTACAGCAGAGGATGAACAATATGCAGAGGATGCTTGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATTAGACAAGAAGTTTCTGCTGCTCTAAATCGTTCAACTGGTTCATCagGAATACATGACTATGAATCACCGGATGATAAATCTAAATGGGAATGTGTGAGGAAAGGGCTTTGCTGTATGTGCTGTGAAAGCAATATCGATTCCTTGTTGTATAGATGTGGTCACATGTGCACATGTTCAAAATGTGCGAATGAGTTGTTCCGAAGTAGAAGAAAGTGCCCAATGTGTCAAGCACCTGTGGTGGAGGTGATACGTGCTTATTCTATACTATA 2582 0.4222 MAVAGLHNVSVLDSSFLRDSHSQSSRRRGDRGRGSTRSSSLLQMWREIEDEHAVSQTHGSPGEGLLQQRSDRFMDNLSQANMPDSHDREQRHILEDAVLGENECETWSQSQSQNGSHYEQEESNNSSCENSSEFGEVERERVRQIFREWMNSGASDDASNISRRDNRARAEWLGETEQERVRVIREWVQMSSQQRGISSGDNREEQPAEIGTQIERVRDVFIVNQSEGQAEQLRRGIRKLCGRQVLLDMLKKAERERQKEVQELLEHHVVSNFSHRNRIQALLRGRFLRNDILIDNNRPTSVAESELGLLRQKQTVSGLREGFFSRKDGFCCSQVTSSTSDISYNSDVDANANEQAEASSSQVVPIVYPEQPEPINHGGKGDRLGSTGGPSCLQGTTSENLDWQDSDSNAHIERGQQLLWPIDSKDWQSSSSVDTERREGTGQNADELPAEYTDNGSMQQSLQTGDGTHSNMQDFTEVHDEQFELGDISNDDNSLANYSNHIEDNIADDVNWNDSTALEVELQGEVVENEGNNWQQTNVEWRNSIVESMDDNQLNEWPQEILGNEGEENSHMQEAPAMWQEDGGFQEAVENWLGGPSDHEGAPVGRIHGFYFPDDDNVYSVELRELLSRRSVSNLLGSSFRESLNQLIQSYVERQGHAQVEWELQETTPSAASVEQELEQQSVDRIIAQGEAVNHPLDLPSPPTPPQTLWERQSRHDNWTQNDVNNQRLGIEWDIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGIHDYESPDDKSKWECVRKGLCCMCCESNIDSLLYRCGHMCTCSKCANELFRSRRKCPMCQAPVVEVIRAYSIL 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00315 860 Coils Coil 736 763 - -
Bva09g00315 860 MobiDBLite consensus disorder prediction 422 438 - -
Bva09g00315 860 MobiDBLite consensus disorder prediction 417 472 - -
Bva09g00315 860 CDD mRING-HC-C3HC5_NEU1 808 846 - -
Bva09g00315 860 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 859 - -
Bva09g00315 860 Coils Coil 243 263 - -
Bva09g00315 860 MobiDBLite consensus disorder prediction 105 132 - -
Bva09g00315 860 PANTHER PROTEIN, PUTATIVE-RELATED 1 859 - -
Bva09g00315 860 MobiDBLite consensus disorder prediction 389 405 - -
Bva09g00315 860 MobiDBLite consensus disorder prediction 17 39 - -
Bva09g00315 860 MobiDBLite consensus disorder prediction 20 34 - -
Bva09g00315 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 858 IPR013083 -
Bva09g00315 860 MobiDBLite consensus disorder prediction 105 135 - -
Bva09g00315 860 ProSiteProfiles Zinc finger RING-type profile. 808 847 IPR001841 -
Bva09g00315 860 Pfam Zinc finger, C3HC4 type (RING finger) 805 852 - -
Bva09g00315 860 SUPERFAMILY RING/U-box 807 853 - -
Bva09g00315 860 MobiDBLite consensus disorder prediction 448 472 - -
Bva09g00315 860 MobiDBLite consensus disorder prediction 370 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00315 Bva-Chr9 1637799 1642400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00315 808 854 C3H Transcription Factor Family AT3G06140 38.298 6.63e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00315 - - gmx:100801329 1147.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00315 09 1637799 1642400 Bva07g02331 07 19089811 19094449 BWGD
Bva09g00315 09 1637799 1642400 Bva09g00315 09 1637799 1642400 ECH
Bva03g02220 03 19416828 19422473 Bva09g00315 09 1637799 1642400 ECH
Bva09g00315 09 1637799 1642400 Bva07g02331 07 19089811 19094449 ECH