Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00313 ATGGCGAACGGTACGAATTCGGAGGAGTTTGTGGTGCTATCTCGGGTCCGGACGGGTCTGAAGAGAGAGTTTGCATTCGCCATGAAGGCTCAATCAGAGATCTGCGGATCTTTGGGTCGGACACGCGCCAGCAAGAACCGAAATGGTGTTCAAGAAAGTCCACGCAGCAAGAGGTCGAAGAAGTCTGGTTCGATGGAGGCTGAGAGAGATGAGGAGAAAGAACAGAATTCGGTTGATGTTGTACAATTGAAGAATTCCGAGGGGGTGAAGATTGAGGAGGATATGGGTGATATGATGAGCGAGGAGGAGGCAAAAAGTGACGTGGTGGATCTTGGGAGCGACGACGAACCCAAGAATCAAATGGGAGAATCTACGGGCCAGAGGGAACCCGAGGATGAGGCAGCCATGCCCATTTGTGAAGAGGAACCCAAGAGCGACGTGGTAGAAACTTTGAGCGACGACGAGCGCAAGAGTAGTTATATGTTAGAATCTTCGAAGGAGGAGATAATGGATGAAATGGCGCAACTCATTTGTGAAAATGAGAGCAAGGAGGAAGAGACCAATGAAACAGATGTGGTTAAGTCGTTGATGAACGAGACCATTAAGAAGGAAGACATGGAGATGTGTCCTCCAAAGGAAGAAGATATTAGTGGGTTAAGACCTGTTTCTGTTAAAGATGATTATAAGGTGAAGCACTTGTCAGTTGAGAAGCCACTAAAGAGGTTTACGCGGGCGGCACTGAAACAAAAAGTGGACCAATCGAAAAAGGAACCCGAGGATGAGGCAGCCATGCCCGTTTGTGAAGAGGAACCCAAGAGCGATGTGGTAGAAACTGTGAGCGACGATGAGCGGAAGAGTAGTCATATTTTAGAATCTTCGAAGGAGGAGGCAATGGTTGAAATGGCACAACCCATTTGTGAAAATGAGAGtaagaaggaagaaacaaatgaAACAGATGTGCATAAGTCGTTGATGAACGAGACAATTAAGAAGGAAGAGACGAAGATATGTCCTCCAGAGGAAGAAGATATTAGTGGGTTAAAACCAATTTCTGTTAACGATGATCATAAGGTGAAGGTCATATCAGTTGATAAGCCACTAAGGAGGTTTACACGGTCGGCACTGAAACAAAAAGTGGATGAATCGATGGGCAAGAAGGAACCCGTTCATGAGGCAGCCATGCCCATTTGTGAAGAGGAACCCAAGAGCGACGTGGTAGACACTGTGAGCGACGATGAGCACAAGAGTAGTCATATGTTAGAATCTTCGAAGGAGGAGGTAATGGATGAAATGGCACAACCCATTTGTGAAAATGAGGGCAAGGAGGAAGAAACAAATGAAACTGATGTGCACAAGTCGTTGATGAATGAGACCATTAAGAAGGAAGAGATGGAGATATGTCCTCCAAAGGAAGAAGATATTAGTGGGTTAAAAACTGTTTCTGTCAACGACGATTATAAGGTTAAGGACATCTCAGTTGAGAAGCCACGAAGGAGGTTTACACGGTCGGTACTGAAACAAAAATTGGATGATACGACGGTCAAAAACGATGGGGAAAACGGTTGTGCCAGACCAATTTTATTAAGTGATAATCTTAAAAGAGAAAGCGAGGGTGGTTCATTATTCACCTCGccaactcaaataaaaatgtcgAGGACTAGCTTGAAGAAGTTCCCTTCGAAGCTGAAGGACCTTCTAGCCACAGGGATTCTTGAGGGAGTGCCTGTGAAATACGTCCGAGGCTTGAAGGCACGAAGGCCGGGAGAAACAGGGCTCCACGGAGTTATTAGAGGCTCTGGGATTGTTTGTTATTGCGAAGTTTGTAATGGAGTCGAAGTTGTCACACCAACTGTGTTTGAGTTGCATGCTGGTAGTGCAAACAAACGCCCCCCAGAGTATATTTTCCTTGAGAATGGGAGCACTCTTCGTGATATCATGAATATGTGTTTGAATCTTCCATTGGACACCTTGGAGAATGCCATCCAAAATGCCCTTGGTGGATTCCCTATGAAGAAATCTGCCCTCTGTTTGAATTGTAGAGTGTCTATTTCTGAAGCCAGCAAGGGATTGTCAAAAGTACTTTGTGATTCATGCATGGAGTTAAAAGAGTCTCGACCTAGCCCCATGGCCAGTTTGGCCACCCATACAGCTGAGACTAGCTATAGCCCTGTTTCATTAGCAGCTACTCCCGGTTCTCCTGAACCAGCTTTGGTTCCAAAGTTATTGAAAAGTGGCATGAAGCACAGCTCTTCTCAGGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTACGTTTGCATAAGTTAGTCTTTGAGGAAGATGTGTTGCCAGATGGAACTGAAGTTGCCTACTATGCTCGTGGACAGAAACTGTTGGTTGGTTATAAAAAGGgatttggaatcatttgtagCTGCTGCAACTCTGAGGTCAGCCCTTCACTGTTTGAAGCTCATGCTGGTTGGGCATCAAGACGTAAGCCCTACTTGCACATATACACTTCTAATGGAGTCTCTCTCCATGAGTTATCTATCTCCTTATCAAGAGGTCGGAGGTTCTCTgccaatgaaaatgatgacCTCTGCAGTATATGTTCAGATGGAGGAGATCTTTTGTGCTGTGATGGATGTCCAAGGGCTTTTCACATAGATTGTGTTCCGTTGTCATCCATTCCAACTGGTACTTGGTATTGTAAATATTGCCAGAATTTGTTCCAGAAGGACAAATATGTGGAGCATAATGTCAATGCCGTGGCAGCTGGAAGGATTGCAGGTGTTGATCCTTTAGAACAGATAAACCAGAGATGCATTCGAATTGTCAATAATCTAAAGGATCAGGGTGGATGTGCGCTGTGCAGAAGCCATGCTTTTAGTAAAAACTTTGGTCCTGGCACAGTGATTATTTGTGATCAGTGTGAAAGAGAATATCATGTTGGGTGTTTGAAGGATCACAACATGCAGAACTTAGAGGAATTGCCTGAAGGAAACTGGTTCTGCTGTACAGAGTGCAATCAAATTCATGTTACTCTTGTGAATTTGGTGGCTCGTGGGGAAGCAAATCTCCCCGATTCCCTTATAAGCATGATTAAAAAGAAGTATGAAGAAAAAGGTTTAGAAACTGGGGGTggttttgatataaaatggaGAATTCTGAATTGGAAGTTGGCTTCTGATAATGAAACCAGGCAATTACTCTCAAAAGCTTGTTCAATTTTCCACGAGCGGTTTGATCCTATAGTTGATACTTCTTCTGGCCGTGACTTCATTCCAACTATGCTTTATGGAAAGAACATTAGAGGTCAAGATTTTGGTGGGATGTACTGTGCGGTACTCACTGTCAACCAACTTGTAGTCTCCGCTGGATTATTTCGTATATTTGGGCAGGAAGTGGCAGAGCTTCCGTTGGTTGCAACAAATACAGATTGCCAAGGACagGGTTACTTCCAGTCATTGTTCTCTTGCATTGAGACGCTGCTTGGGTCTTTAAAAGTGAGACACCTTGTCCTACCGACTGCCGATGAAACTGAATCAATATGGATCAATAAATTTGGATTTGCCAAGTTAGACCAAGATGAGATgaacaattttaagaaatattatcaaatgatGATTTTCCAAGGGACAGCAGTGCTACACAACTCAAGCTCAAAGAAGCAAAAGCCCGCCGAGGTTAGCGTTTA 3677 0.4311 MANGTNSEEFVVLSRVRTGLKREFAFAMKAQSEICGSLGRTRASKNRNGVQESPRSKRSKKSGSMEAERDEEKEQNSVDVVQLKNSEGVKIEEDMGDMMSEEEAKSDVVDLGSDDEPKNQMGESTGQREPEDEAAMPICEEEPKSDVVETLSDDERKSSYMLESSKEEIMDEMAQLICENESKEEETNETDVVKSLMNETIKKEDMEMCPPKEEDISGLRPVSVKDDYKVKHLSVEKPLKRFTRAALKQKVDQSKKEPEDEAAMPVCEEEPKSDVVETVSDDERKSSHILESSKEEAMVEMAQPICENESKKEETNETDVHKSLMNETIKKEETKICPPEEEDISGLKPISVNDDHKVKVISVDKPLRRFTRSALKQKVDESMGKKEPVHEAAMPICEEEPKSDVVDTVSDDEHKSSHMLESSKEEVMDEMAQPICENEGKEEETNETDVHKSLMNETIKKEEMEICPPKEEDISGLKTVSVNDDYKVKDISVEKPRRRFTRSVLKQKLDDTTVKNDGENGCARPILLSDNLKRESEGGSLFTSPTQIKMSRTSLKKFPSKLKDLLATGILEGVPVKYVRGLKARRPGETGLHGVIRGSGIVCYCEVCNGVEVVTPTVFELHAGSANKRPPEYIFLENGSTLRDIMNMCLNLPLDTLENAIQNALGGFPMKKSALCLNCRVSISEASKGLSKVLCDSCMELKESRPSPMASLATHTAETSYSPVSLAATPGSPEPALVPKLLKSGMKHSSSQGKSQGRLTRKDLRLHKLVFEEDVLPDGTEVAYYARGQKLLVGYKKGFGIICSCCNSEVSPSLFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSRGRRFSANENDDLCSICSDGGDLLCCDGCPRAFHIDCVPLSSIPTGTWYCKYCQNLFQKDKYVEHNVNAVAAGRIAGVDPLEQINQRCIRIVNNLKDQGGCALCRSHAFSKNFGPGTVIICDQCEREYHVGCLKDHNMQNLEELPEGNWFCCTECNQIHVTLVNLVARGEANLPDSLISMIKKKYEEKGLETGGGFDIKWRILNWKLASDNETRQLLSKACSIFHERFDPIVDTSSGRDFIPTMLYGKNIRGQDFGGMYCAVLTVNQLVVSAGLFRIFGQEVAELPLVATNTDCQGQGYFQSLFSCIETLLGSLKVRHLVLPTADETESIWINKFGFAKLDQDEMNNFKKYYQMMIFQGTAVLHNSSSKKQKPAEVSV 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00313 1225 MobiDBLite consensus disorder prediction 33 168 - -
Bva09g00313 1225 SMART PHD_3 947 1003 IPR001965 -
Bva09g00313 1225 SMART PHD_3 860 901 IPR001965 -
Bva09g00313 1225 ProSitePatterns Zinc finger PHD-type signature. 948 1002 IPR019786 -
Bva09g00313 1225 Coils Coil 166 186 - -
Bva09g00313 1225 SUPERFAMILY FYVE/PHD zinc finger 946 1000 IPR011011 -
Bva09g00313 1225 MobiDBLite consensus disorder prediction 306 349 - -
Bva09g00313 1225 MobiDBLite consensus disorder prediction 248 349 - -
Bva09g00313 1225 MobiDBLite consensus disorder prediction 86 168 - -
Bva09g00313 1225 MobiDBLite consensus disorder prediction 248 295 - -
Bva09g00313 1225 CDD PHD1_AIRE 860 900 - -
Bva09g00313 1225 ProSitePatterns Zinc finger PHD-type signature. 861 900 IPR019786 -
Bva09g00313 1225 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1100 1204 IPR016181 -
Bva09g00313 1225 SUPERFAMILY FYVE/PHD zinc finger 849 903 IPR011011 -
Bva09g00313 1225 Pfam Tify domain binding domain 594 649 IPR032308 -
Bva09g00313 1225 Pfam Tify domain binding domain 794 842 IPR032308 -
Bva09g00313 1225 PANTHER AUTOIMMUNE REGULATOR 1 260 - -
Bva09g00313 1225 PANTHER AUTOIMMUNE REGULATOR 237 1212 - -
Bva09g00313 1225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 848 925 IPR013083 -
Bva09g00313 1225 PANTHER AUTOIMMUNE REGULATOR 1 260 - -
Bva09g00313 1225 PANTHER AUTOIMMUNE REGULATOR 237 1212 - -
Bva09g00313 1225 ProSiteProfiles Zinc finger PHD-type profile. 945 1005 IPR019787 -
Bva09g00313 1225 Gene3D - 1044 1212 - -
Bva09g00313 1225 ProSiteProfiles Zinc finger PHD-type profile. 858 903 IPR019787 -
Bva09g00313 1225 Pfam PHD-finger 861 902 IPR019787 -
Bva09g00313 1225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 943 1005 IPR013083 -
Bva09g00313 1225 MobiDBLite consensus disorder prediction 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00313 Bva-Chr9 1620835 1627625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00313 555 1222 PHD Transcription Factor Family AT2G36720 45.679 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva09g00313 TDBD 3.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00313 - - var:108333944 1076.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00313 09 1620835 1627625 Bva07g02333 07 19103998 19110848 BWGD
Bva09g00313 09 1620835 1627625 Bva09g00313 09 1620835 1627625 ECH