Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00309 atgaattcaagGGCAATATCTGGGTTCTCAAATGTTCCTCAAGGGCTGCAGACATTTGGTGTAGATGAAGATTTGATTTTGGCTTCTGTTGAAGTAAACTCTGGGTCAGGTTCGCAGCACTGTACCTCCCTCCTCTTCAATCTATCTCTACTCAAAGACAAGGTTAGTCAGGTGCAGACGCTGATGGGTTTTCTTATCTCCCCAGATCAGAGGCCACCCGAATCAACTTCCGTGGCTGTGGCCAGCATCAACTCCATAATACAAGACATCATAGTCACTGCCACTTCCATGATGTTCACTTGCCAACATTTGTCTCTGAGTTCCACCCCTCCAGGTACTACCACTAATTGCACTAATCAATTGCACCAACAACAGTACCAATCCCATGATAGCGTACCTCAATCGAACTTTGCCAAAAATAGTCGACAAGTTACCCCCATAGGCCAAGATAAAGGGCTCTTTTCTAGTACTGAAACCTTGGACTGTTATGGTGAAGGCTTTAATAATGCTGATTGTCTTAAGGATGATGATCCAAGTACGGTCGGAATTAGTGAAACTAATAACAGCAAGGGAGAATTGTCTTTAGGGGATGATGATCAAAGGGATGAAGGGTTCAAGGGGCTTTCGCCAAAGAACTATGATATCATTGAGTTGGATGCTGCAGATTTATTAGCTAAGTACACACATTATTGCCAAATTTGTGGGAAAGGGTTCAAGCGCGATGCAAATTTAAGGATGCACATGAGAGCTCACGGAGATGAGTACAAGACAAGTGCTGCCTTGAGCAACCCAATGAAGAATAAGGAGAACTTGGGTGAAGACAAGGACTGTTTGATGAGTCCAAGGCCTAAGAAGTACTCATGCCCACAACTGGGGTGCAGGTGGAACAGGAAGCATGCCAAGTTCCAGCCTTTGAAGTCTATGATTTGTGTGAAGAACCACTACAAGAGAAGCCATTGCCCTAAAATGTACGTGTGCAAGATTTGCAACCAAAAGCAATTCTCTGTGCTTTCTGATCTTAGGAGTCACGAGAAGCACTGTGGGGATGTCAAGTGGCAGTGCTCCTGTGGCACCACATTTTCCAGGAAAGATAAGCTTATGGGACATGTTGCTTTGTTCGTTGGACACGCCCCAGCTATCAACGGCTTGTCATTTTTCAGGAAATTAGAGCTGCagaaattgta 1184 0.4409 MNSRAISGFSNVPQGLQTFGVDEDLILASVEVNSGSGSQHCTSLLFNLSLLKDKVSQVQTLMGFLISPDQRPPESTSVAVASINSIIQDIIVTATSMMFTCQHLSLSSTPPGTTTNCTNQLHQQQYQSHDSVPQSNFAKNSRQVTPIGQDKGLFSSTETLDCYGEGFNNADCLKDDDPSTVGISETNNSKGELSLGDDDQRDEGFKGLSPKNYDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNKENLGEDKDCLMSPRPKKYSCPQLGCRWNRKHAKFQPLKSMICVKNHYKRSHCPKMYVCKICNQKQFSVLSDLRSHEKHCGDVKWQCSCGTTFSRKDKLMGHVALFVGHAPAINGLSFFRKLELQKL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00309 394 SMART c2h2final6 229 251 IPR013087 -
Bva09g00309 394 SMART c2h2final6 286 319 IPR013087 -
Bva09g00309 394 SMART c2h2final6 324 346 IPR013087 -
Bva09g00309 394 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 19 388 IPR044300 GO:0010044|GO:0010447
Bva09g00309 394 Gene3D Classic Zinc Finger 322 371 - -
Bva09g00309 394 MobiDBLite consensus disorder prediction 192 208 - -
Bva09g00309 394 Pfam Zinc finger, C2H2 type 229 251 IPR013087 -
Bva09g00309 394 Gene3D Classic Zinc Finger 222 287 - -
Bva09g00309 394 PANTHER OS08G0562300 PROTEIN 19 388 - -
Bva09g00309 394 SUPERFAMILY beta-beta-alpha zinc fingers 227 254 IPR036236 -
Bva09g00309 394 MobiDBLite consensus disorder prediction 174 208 - -
Bva09g00309 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Bva09g00309 394 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00309 Bva-Chr9 1608701 1609885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00309 43 379 C2H2 Transcription Factor Family AT5G22890 50.146 5.98e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva09g00309 zf-C2H2 0.0001 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00309 - - gmx:100802769 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00309 09 1608701 1609885 Bva07g02338 07 19119896 19121062 BWGD
Bva09g00309 09 1608701 1609885 Bva09g00309 09 1608701 1609885 ECH