Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00307 ATGGAGATGGAAGCTTGTACTGTCACTGGTACTGGTACTGGCACCCATGAATTTGTGGGGTCGTCCCCTAATATCAGCGATGCCACGCACATCCTCATCAAAGGCAAGCGCACCAAGCGTCAGAGGCCCTTGTCGCCTTCTCCTAATTCCGCCGTCAACGTTGCCGTTCCCCTTCCCACCAATACCGTGATCACTTCTAGCTCCTCAAGTGCTTCCGAGGATGCATGTGCTACTCGTGATGTTAGTGGCGGTGGAGGAGGCGATTGCGGTTCCTTCTCGTCTACCACGGCAACCTATGAGAGCACCGAGGAAGAAGAGGACATGGCCAACTGTTTGATTCTCTTGGCACAAGGAGACGCCGGCGCTCCTCGTCTTcataaatttcatcaaattcaaGCTCAAGCGGATAATAATAAGACAGAACAAAAGGGCAGCAGCCGAATCAGATTTGGTGAGATGGCCACGGTGTCTGCCACCGCTAGCAGCAAAATGGTTTTCGATATCTATGAGTGCAAAACGTGTAACCGAACATTCTCTTCGTTTCAAGCGCTGGGCGGCCACAGGGCAAGCCACAAAAAGCCTAAGGtatcttctccttcttcttcttctccagaCGAAAAGAAACAACCATCGCCGCCGGCGTTAGCGCTACCCcaaccccaaccccaaccccaaccGGATTATGATTTTGAAGAAGCCGTAGCCCACATCAAAACTTGGCCTCCCCATCAAATTTCCCTTCAATTGCCGAGTAACAGATCGGGTTTCAATACCAGCCTTAACCTTAACAACAAGGCGGCCAAGTTACACGAGTGTTCGATATGTGGGTCAGAATTCACATCTGGGCAAGCATTGGGTGGGCACATGAGGAGACACAGGGCATCCACAAGAACTAGTTCTGATCAGGTGGCGGCGTCCGTGGGTCCCGCAGAAGAAGCAACTTGTCACACCTCCCCCGCCGTTAACGTTCGAGTTAAGCCCAGGAATATTCTATCATTGGATCTTAACCTGCCGGCGCCCGAAGACGATCTCCGGGAGTCCAAGTTTCAGTTTGTGCCAACACAAAAGGCTATGGTGCTGTCTGCTCCGGCTTTGGTGGATTGCCATTATTA 1112 0.4883 MEMEACTVTGTGTGTHEFVGSSPNISDATHILIKGKRTKRQRPLSPSPNSAVNVAVPLPTNTVITSSSSSASEDACATRDVSGGGGGDCGSFSSTTATYESTEEEEDMANCLILLAQGDAGAPRLHKFHQIQAQADNNKTEQKGSSRIRFGEMATVSATASSKMVFDIYECKTCNRTFSSFQALGGHRASHKKPKVSSPSSSSPDEKKQPSPPALALPQPQPQPQPDYDFEEAVAHIKTWPPHQISLQLPSNRSGFNTSLNLNNKAAKLHECSICGSEFTSGQALGGHMRRHRASTRTSSDQVAASVGPAEEATCHTSPAVNVRVKPRNILSLDLNLPAPEDDLRESKFQFVPTQKAMVLSAPALVDCHY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00307 370 Gene3D Classic Zinc Finger 253 317 - -
Bva09g00307 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Bva09g00307 370 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 23 370 - -
Bva09g00307 370 PANTHER ZINC FINGER PROTEIN ZAT5 23 370 - -
Bva09g00307 370 MobiDBLite consensus disorder prediction 211 225 - -
Bva09g00307 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 297 IPR013087 -
Bva09g00307 370 MobiDBLite consensus disorder prediction 65 87 - -
Bva09g00307 370 SMART c2h2final6 169 191 IPR013087 -
Bva09g00307 370 SMART c2h2final6 270 292 IPR013087 -
Bva09g00307 370 SUPERFAMILY beta-beta-alpha zinc fingers 168 292 IPR036236 -
Bva09g00307 370 ProSitePatterns Zinc finger C2H2 type domain signature. 272 292 IPR013087 -
Bva09g00307 370 Pfam C2H2-type zinc finger 270 294 - -
Bva09g00307 370 Pfam C2H2-type zinc finger 169 194 - -
Bva09g00307 370 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Bva09g00307 370 MobiDBLite consensus disorder prediction 184 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00307 Bva-Chr9 1600802 1602548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00307 26 370 C2H2 Transcription Factor Family AT2G28200 41.193 1.45e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva09g00307 zf-C2H2_6 3.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00307 - - zju:107410663 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00307 09 1600802 1602548 Bva07g02339 07 19124700 19125987 BWGD
Bva09g00307 09 1600802 1602548 Bva09g00307 09 1600802 1602548 ECH
Bva03g02233 03 19492628 19494113 Bva09g00307 09 1600802 1602548 ECH
Bva04g02524 04 22782216 22783252 Bva09g00307 09 1600802 1602548 ECH
Bva13g02018 13 16131958 16132975 Bva09g00307 09 1600802 1602548 ECH
Bva09g00307 09 1600802 1602548 Bva03g02233 03 19492628 19494113 ECH
Bva07g02339 07 19124700 19125987 Bva09g00307 09 1600802 1602548 ECH
Bva09g00307 09 1600802 1602548 Bva07g02339 07 19124700 19125987 ECH