Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00305 ATGGAAGATTCCCAAGAAACTGCGATGCATATTAATGAGTTTGAGCTGCACGACTTCATTGACGATCCCAACTTTGAtcagtttatcaatttgattcgTGGGGAGAATGAGAACTCTATATGTAACTTGGATTCCGAACTTATCAATGGTTGCTTCCTCGATAACCAACTTTTTTCGTACCCTGGAAACCCATTAGACTACAATGCTGTGAATTTGAACGGGAATGTTTATGATCCCGGTTCCACGCTTAGCTCCTTCTCATGTTTTGAGGGGGAAGTTAAAGGAGgagaaggaggagaagaagaagaagaaaatgatggagAGGAAGACTCTTCTGCCACAACCAACACTGCCAGTACAAGTGCTAATACCACGCCAAGGCGAAAAGCTGATCGGTccaagactttgatttctgaGAGGAGGAGGAGAGGCCAAATGAAGGAGAAGCTCTATGCATTGCGTTCTTTGGTTCCTAACATAAGCAAGATGGACAAGGCTTCTATTGTTGGAGATGCTGTTTCTTACGTGCAAAAGCTACAAGCACAAGCTAAGAAGCTGAAGGCTGAAGTTGCAGGCCTCGAAGCATCCTTAATAGCCTCAGAAAATTATCAAGGATCAGTTGAAAACCTCAACAAGGTGCTGGTCCACCACAACAACCTTCCAATCTGCAAGAAGATTATGCAGATGGACGCGTTTCAAGTGGAGGAAAGGGGTTTTTATGTGAAACTGGTGTGCAACAAAGGAGAGGGAGTGGCTGCCTCATTGTACAGGGCTCTTGAGTCATTGGCAGGGTTCAATGTTCAGAATTCAAACTTGGCCACAGATTCTGACAGATTCCTACTTACTTTTACTTTGAATGTGAAAGGTTCAGAGTCAGAGATTAACCTGCCAAATTTGAAGTTATGGATGGCAGGCGCTCTTCTGAACCAAGGCTTCGAATTCCTGCGAGACTTTTA 956 0.409 MEDSQETAMHINEFELHDFIDDPNFDQFINLIRGENENSICNLDSELINGCFLDNQLFSYPGNPLDYNAVNLNGNVYDPGSTLSSFSCFEGEVKGGEGGEEEEENDGEEDSSATTNTASTSANTTPRRKADRSKTLISERRRRGQMKEKLYALRSLVPNISKMDKASIVGDAVSYVQKLQAQAKKLKAEVAGLEASLIASENYQGSVENLNKVLVHHNNLPICKKIMQMDAFQVEERGFYVKLVCNKGEGVAASLYRALESLAGFNVQNSNLATDSDRFLLTFTLNVKGSESEINLPNLKLWMAGALLNQGFEFLRDF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00305 318 MobiDBLite consensus disorder prediction 127 141 - -
Bva09g00305 318 MobiDBLite consensus disorder prediction 88 141 - -
Bva09g00305 318 SMART finulus 136 185 IPR011598 GO:0046983
Bva09g00305 318 Gene3D - 121 196 IPR036638 GO:0046983
Bva09g00305 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 195 IPR036638 GO:0046983
Bva09g00305 318 Coils Coil 176 196 - -
Bva09g00305 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Bva09g00305 318 MobiDBLite consensus disorder prediction 96 110 - -
Bva09g00305 318 Pfam Helix-loop-helix DNA-binding domain 137 180 IPR011598 GO:0046983
Bva09g00305 318 MobiDBLite consensus disorder prediction 111 126 - -
Bva09g00305 318 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 315 - -
Bva09g00305 318 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00305 Bva-Chr9 1588769 1590015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00305 1 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 54.348 5.62e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva09g00305 HLH 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00305 - - gmx:100805451 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00305 09 1588769 1590015 Bva09g00305 09 1588769 1590015 ECH