Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00304 ATGGAACTTGGAATTGGGAATTTCGGGTGCACGCATTACAAAAGAAGATGCAAGATCAGAGCACCGTGTTGTAATGAAGTTTTTGACTGCAGGCATTGCCATAATGAAGCTAAGAACGGCGACGAAATCAATCCTCTTGATCGTCATGATATCCCACGCCATCAAGTTAAGAAGGTCATCTGCTCCTTGTGCGAAACAGAACAAGATGTTCAACAGTATTGCATAAACTGTGGAGTTTGCATGGGGAAATATTTCTGTGCTACATGCAAATTCTTCGATGATGATATATCGAAGAACCAATACCATTGTGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTTTTTCACTGCAAGAGATGTGGATGTTGCTACTCTAAGGTTATGAAAGATGGGCACCCATGCGTGGAAAAAGCAATGCATCACAATTGCCCAGTTTGCTTTGAGTACCTATTTGATTCATTGAGAGATATTACTGTCTTACCTTGCGGGCATACCATACATTTGGACTGTGTTAAAGAGATGGAGAAACATTGTAGGTACGCCTGTCCTGTTTGCTCCAAATCCTTCTGTGACGTGTCAAGTTTGTGGAAGAAGCTTGATCAAGTGATTGCCTTAACTCCTATACCTGAAGCTTACAAAGATAAGctgGTATGGATACTCTGCAATGACTGCGGGGTAAACTCTGAAGTGCAATTCCAAATCGTGGCGCACAAGTGCCAAAGTTGTAATTCATACAACACGCTTCAGATACGAGGAACTCCAGCTACCTCATGCTCCTCTGGAGTGGCTGAGATGGTGAGATG 812 0.4273 MELGIGNFGCTHYKRRCKIRAPCCNEVFDCRHCHNEAKNGDEINPLDRHDIPRHQVKKVICSLCETEQDVQQYCINCGVCMGKYFCATCKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGCCYSKVMKDGHPCVEKAMHHNCPVCFEYLFDSLRDITVLPCGHTIHLDCVKEMEKHCRYACPVCSKSFCDVSSLWKKLDQVIALTPIPEAYKDKLVWILCNDCGVNSEVQFQIVAHKCQSCNSYNTLQIRGTPATSCSSGVAEMVR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00304 270 SUPERFAMILY CHY zinc finger-like 7 81 IPR037274 GO:0008270
Bva09g00304 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 1 268 - -
Bva09g00304 270 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 268 - -
Bva09g00304 270 Pfam CHY zinc finger 10 91 IPR008913 GO:0008270
Bva09g00304 270 Pfam Zinc-ribbon 193 250 IPR039512 -
Bva09g00304 270 Gene3D - 217 259 - -
Bva09g00304 270 Pfam Ring finger domain 145 188 IPR001841 -
Bva09g00304 270 ProSiteProfiles Zinc finger RING-type profile. 146 189 IPR001841 -
Bva09g00304 270 SMART ring_2 146 188 IPR001841 -
Bva09g00304 270 SUPERFAMILY RING/U-box 144 193 - -
Bva09g00304 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 209 IPR013083 -
Bva09g00304 270 ProSiteProfiles Zinc finger CHY-type profile. 3 79 IPR008913 GO:0008270
Bva09g00304 270 ProSiteProfiles Zinc finger CTCHY-type profile. 81 145 IPR017921 -
Bva09g00304 270 SUPERFAMILY Zinc hairpin stack 82 139 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00304 Bva-Chr9 1584968 1587196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00304 8 255 C2H2 Transcription Factor Family AT3G18290 39.608 7.71e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00304 K10144 - gmx:100812709 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00304 09 1584968 1587196 Bva09g00304 09 1584968 1587196 ECH