Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00302 ATGCTCTGGTCGATACCCTCTCGCTTGTCTCTTGCTTACCATTACCCTGCATTAGGCATTAGGTCTCTCTTCCGTCCGAAAATTACAAGACCGAGACAGAGTCCCCTCACTTTGAATCCCATCTATTACTCAAACCATAACAATCGAAGCATGTCCTCGTCGCGACCCTCTGCTTTCGATGCCCTTATGTCTGGCGCTCGCGCCGCCGCCAAAAAGAAACCCCAACCATCATCTCCCAAGAAACGGAAATCCCCCGATTCCAGTTCCACCCAAGACCCTAAAAGCATTAAAACCGTTGATTCTTCCCCACTTGGGACAACTCGCTTGTCATCAGACCCCATACAAGGCACGGACACTAACACCAACACCACACATTCCGAGAATGCGCCAAAATTGACTAGCGCCTTGCGCCCCGTATCTTCTCAGGAGGAGAAGATTACacatttgaagaaaaacatTTCTCAATTGAAGAAGAAGCCTGGAGATTTTAATCCAAGTTTGGTTGCATGTTGGAAAAAAGATGAACCTTTGCCCTTTCTGTTTCTTGCATTGGCTTTCGATATGATTGCTCAAGAGACTGGGCGGATTGTAATTACTGATATAGCTTGTAATATGTTGAGGACTGTCATGCATACTGCACCTGATGATTTGGTGGCTGTTGTTTATCTTTCCGCAAATAGGATTGCTCCGGCACACGAGGGTTTGGAGTTGGGAATAGGGGATTCTTCCATCATTAAAGCGCTAGCAGAGGCCTTTGGAAGGACTGAATCACAGATAAAAAGTCAATATAAGgaaaaaggtGATTTGGGTCTTGTTGCCAAAGCGAGTCGCTCATCTCAATCAATGATGCGGAAGCCTGATGCTTTAACTATTAAGAAGGTTTTCAACACGTTCCGTTTAATTGCCAAGGAATCTGGAAAAGACAgtcaagagaagaaaaagaatcatatGAAGGCACTTCTTGTTGCTGCTACTGATTGTGAACCTCTTTATCTAATTCGCTTACTTCAGTCAAAGCTGCGAATTGGCCTGGCAGAGCAAACTCTCTTAGCTGCTTTAGGACAAGCTGCTGTGTACAATGAAGAACATTCTACACCACCTTCGAAAATTCAGTCTCCTTTAGAAGAGGCTGCAAAGATTATTAAACAAGTCTATTCTGTTCTACCTGTTTATGACAAAATAGTCCCTGCCCTTCTTAGTGGTGGCATATGGAAACTTCCAGAGACATGCAGCTTTACTCCTGGTGTTCCAGTTGGACCTATGCTGTcaaaagcaaccaagagtgtATCTGAAATTCTAAATAGATTCCAGGATGTGGAGTTTACCTGTGAATACAAATACGATGGAGAGCGTGCCCAGATACATTACATGGAGAATGGATTAGTTGAAATTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTATCCTGATGTTGTTGCTGCAGTTTCAAgGTTAAAGAAACCATCTGTATCATCATTTGTTCTTGATTGTGAAATTGTTGCATATGACagtgaaaaacagaaaattctgCCTTTCCAGGTCCTCAGTACTCGAAAAAGGAAAGATGTTGATGTAAACGAGATAAAGATCAATGTTTGCatatttgcttttgatttgttGTATCTTAATGGCCAACCACTTCTTCGGGAACACCTGAAAGTCCGCAGAGAGCATCTTTATGCTTCGTTTGAGGAAGAAACTGGATTTTTTCAGTTTGCAACAGCAATAACAACAAATGATATTGAGGAAATACAGAAATTTCTTGATGCAGCTGTTGATGCAAGTTGTGAgggattaattattaaatcattagATAAAGATGCTACATATGAACCTTCCAAGAGGTCACTCAACTGgctaaaattgaagaaagattaTCTGGAAAGCATAGGGGATTCATTGGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGTACTGGGGTCTATGGTGCCTTTCTCCTTGCTTGCTATGATGGCAGTAGTGAACAGTTCCAAAGCATTTGTAAGATAGGCACTGGATTCTCTGAAGCAGTGCTTGAAGAACGTTCTGTTAGTCTTCGTTCAAAAGTGATTCCCAAACCAAAGCCATACTATCGGTATGCAGAAACAATCAATCCTGATGTATGGTTTGAAGCCTGTGAAGTGTGGGAGGTGAAAGCAGCAGACTTGACTATTAGCCCTGTTCATCGTGCTGCTGTGGGCATAGTTGATTCGGATAAGGGAATTTCACTTCGATTTCCTCGTCTTGTTCGAGTTCGGGATGACAAAGCTCCTGAAGAAGCCTCATCATCTGAGCAGGTTGCAGAGATGTATAATGCTCAAAAGCACAATCACCCGAACAATCCAGATGATAGTGAAGATGATTG 2378 0.4054 MLWSIPSRLSLAYHYPALGIRSLFRPKITRPRQSPLTLNPIYYSNHNNRSMSSSRPSAFDALMSGARAAAKKKPQPSSPKKRKSPDSSSTQDPKSIKTVDSSPLGTTRLSSDPIQGTDTNTNTTHSENAPKLTSALRPVSSQEEKITHLKKNISQLKKKPGDFNPSLVACWKKDEPLPFLFLALAFDMIAQETGRIVITDIACNMLRTVMHTAPDDLVAVVYLSANRIAPAHEGLELGIGDSSIIKALAEAFGRTESQIKSQYKEKGDLGLVAKASRSSQSMMRKPDALTIKKVFNTFRLIAKESGKDSQEKKKNHMKALLVAATDCEPLYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEEHSTPPSKIQSPLEEAAKIIKQVYSVLPVYDKIVPALLSGGIWKLPETCSFTPGVPVGPMLSKATKSVSEILNRFQDVEFTCEYKYDGERAQIHYMENGLVEIYSRNAERNTGKYPDVVAAVSRLKKPSVSSFVLDCEIVAYDSEKQKILPFQVLSTRKRKDVDVNEIKINVCIFAFDLLYLNGQPLLREHLKVRREHLYASFEEETGFFQFATAITTNDIEEIQKFLDAAVDASCEGLIIKSLDKDATYEPSKRSLNWLKLKKDYLESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDGSSEQFQSICKIGTGFSEAVLEERSVSLRSKVIPKPKPYYRYAETINPDVWFEACEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKAPEEASSSEQVAEMYNAQKHNHPNNPDDSEDD 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00302 792 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 444 452 IPR016059 GO:0003909
Bva09g00302 792 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 162 410 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bva09g00302 792 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 412 630 - -
Bva09g00302 792 Gene3D DNA ligase/mRNA capping enzyme 449 574 - -
Bva09g00302 792 MobiDBLite consensus disorder prediction 65 143 - -
Bva09g00302 792 Gene3D - 140 422 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bva09g00302 792 Pfam ATP dependent DNA ligase domain 420 624 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bva09g00302 792 Gene3D - 629 790 IPR012340 -
Bva09g00302 792 ProSiteProfiles ATP-dependent DNA ligase family profile. 526 662 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bva09g00302 792 CDD OBF_DNA_ligase_I 632 777 - -
Bva09g00302 792 CDD Adenylation_DNA_ligase_I_Euk 409 627 - -
Bva09g00302 792 PANTHER DNA LIGASE 1 71 792 - -
Bva09g00302 792 Coils Coil 139 159 - -
Bva09g00302 792 Pfam ATP dependent DNA ligase C terminal region 649 760 IPR012309 GO:0003910|GO:0006281|GO:0006310
Bva09g00302 792 SUPERFAMILY Nucleic acid-binding proteins 632 778 IPR012340 -
Bva09g00302 792 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 236 775 IPR000977 GO:0003910|GO:0005524|GO:0071897
Bva09g00302 792 Pfam DNA ligase N terminus 178 353 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bva09g00302 792 Gene3D - 430 628 - -
Bva09g00302 792 ProSitePatterns ATP-dependent DNA ligase signature 2. 598 624 IPR016059 GO:0003909
Bva09g00302 792 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 71 792 - -
Bva09g00302 792 MobiDBLite consensus disorder prediction 758 792 - -
Bva09g00302 792 MobiDBLite consensus disorder prediction 81 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00302 Bva-Chr9 1570216 1575815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00302 48 792 Core DNA Replication Machinery Family AT1G08130 69.789 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00302 K10747 - jre:108989700 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00302 09 1570216 1575815 Bva09g00302 09 1570216 1575815 ECH