Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00256 ATGTCAGAGGATATCACAAATATGAAGGATGCTTGGCTTTTCGACAAGAATTTTAGCAGCCTCTcagatgaaatatttgatgatgCCATGAAGCTTCTTGATTTTCCGCTGGAAGAtgtggaaaataattttccgGAAGAAGATTGGGATGCTCAATTAAAACACCTTGAAGAACcatcttttgatattttctcaatgGCTCCATATGGGTTGTGTGATAGTACTCAACATGACAATCCAAAACTAAAACTCGGAAGGAGCTTCTCAGCTTGTAATGAGATTTCTCCAATAAAACAACAGACTGAAACTTTGGGATTCACTTACACCAAATGCATTCCCAacccaaatgtctcttccaaGGGTAAAGACTTGCACCTGTTCCGGACATACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTCTTCCTCAGGTGAGAATTGCTCATTTGATCTACCTATCATCCCAGTAAAGGGTGCTCGAAGCAAACGTCGACGTCTCTCAAGCTTCAGTCCTCTGTTCTCGATTTCTTTCATCTCTAAATCACCAGCTCTGCAAAAATCTCAAAGGACAGCTGCTTCTGAACTAGACTTAGAAACACAGCCTAACGGGAAGTTACTAAACAGAGTTAAAGGGAAGCAGAGGAAAAGGGATCTCTCACTGCTCTCAGGTCCTGTCGAGATGAAGAGATCCTCGTCGCAAGAGTCAGTGGTGCCCCGAAAATGCACGCATTGCGAGGTGACAAAAACTCCACAATGGAGGGAGGGTCCCCTGGGTCCAAAAACCCTTTGCAATGCTTGTGGAGTTAGATACAGGTCCGGTCGCCTCTTTCCTGAGTACCGGCCCGCAGCTAGCCCCGCTTTTGTTGAATCAAAGCACTCCAACTGCCACAAGAAGGTTATAGAGATGAGAAACAGTGCCATACACATGCACGCCCAGGGGGCTGTCGGAGGTTCTATGTTGACTTCATCATCAAACATTTCGGGAAATTTTCTAGGATA 998 0.4188 MSEDITNMKDAWLFDKNFSSLSDEIFDDAMKLLDFPLEDVENNFPEEDWDAQLKHLEEPSFDIFSMAPYGLCDSTQHDNPKLKLGRSFSACNEISPIKQQTETLGFTYTKCIPNPNVSSKGKDLHLFRTYSPVSVFESSSSSSGENCSFDLPIIPVKGARSKRRRLSSFSPLFSISFISKSPALQKSQRTAASELDLETQPNGKLLNRVKGKQRKRDLSLLSGPVEMKRSSSQESVVPRKCTHCEVTKTPQWREGPLGPKTLCNACGVRYRSGRLFPEYRPAASPAFVESKHSNCHKKVIEMRNSAIHMHAQGAVGGSMLTSSSNISGNFLG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00256 332 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Bva09g00256 332 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 28 305 - -
Bva09g00256 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 238 298 - -
Bva09g00256 332 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Bva09g00256 332 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Bva09g00256 332 Gene3D - 230 308 IPR013088 GO:0006355|GO:0008270
Bva09g00256 332 PANTHER GATA TRANSCRIPTION FACTOR 28 305 - -
Bva09g00256 332 CDD ZnF_GATA 240 285 IPR000679 GO:0006355|GO:0043565
Bva09g00256 332 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00256 Bva-Chr9 1307116 1310593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00256 21 303 C2C2-Gata Transcription Factor Family AT1G08010 39.446 4.68e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva09g00256 GATA 5.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00256 - - gmx:100813303 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00256 09 1307116 1310593 Bva07g02392 07 19423800 19427685 BWGD
Bva09g00256 09 1307116 1310593 Bva09g00256 09 1307116 1310593 ECH
Bva03g01105 03 10331864 10335062 Bva09g00256 09 1307116 1310593 ECH
Bva09g00256 09 1307116 1310593 Bva07g02392 07 19423800 19427685 ECH