Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00255 ATGAAGGAAACTGAGAAGAGCTTGGATCCGCAACTATGGCACGCTTGCGCTGGAGGTATGGTTCAGATGCCTCCCGTGAACTCGAAAGTTTTCTACTTTCCTCAAGGGCATGCCGAACATGCTCAGCCACAGGCCAGCGTTGATTTTGCGGCCTCCTTAGGCTCAAGGGTTCCACCGCTCATTCTTTGCCGAGTGGCAGCTGTAAAATTCTTGGCAGACCCAGAAAGTGATGAAGTTTATGCGAGGATAAGGTTAATTCCTTTAAGAAACTCAGAGGTTGACTATGACGGTGATGGGGTTGTCGAGAGTAATGGATCTGAGAATTCTGAGAAGCCCGCATCTTTTGCAAAGACATTAACCCAATCTGATGCCAACAATGGAGGAGGATTCTCGGTTCCAAGGTACTGTGCTGAGACTATCTTTCCAAGGCTGGATTATTCTGCAGATCCACCAGTTCAGACTGTGATTGCGAAGGACGTTCATGGTGAAATTTGGAAATTCAGACATATCTACAGAGGAACACCTCGCAGGCACTTGCTAACAACTGGCTGGAGCAGTTTCGTGAACCAGAAGAAACTTGTTGCAGGGGATTCTATCGTGTTTCTGAGGGCTGAAAACGGAGATCTCTGTGTTGGAATTCGTCGAGCAAAGCGGGGAATTGGTGGCGGATCAGAGACCCCATCTGGGTGGAGCCCTGGTCCCGGGAATTGCGTTGGACCCTATGgtgctttttctgttttcttgaGAGAAGAGAACAAGGTGTTGCGAAGTGGTTCGGGCCCTGGGGGCAATTTCAGTGGAAGATCAAGAGTGAGACTTGAGTCTGTGATGGAAGCCGTGAGACTTGCTGCAAGTGGGCAGCcatttgaatttgtttattaCCCAAGAGCAAGCACTCCCGAGTTCTGCATTAAGACTGCAGCTGTTGCGGCAGCAATGAGAACTCAGTGGTGCGCTGGGATGAGGTTCAAGATGGCCTTTGAAACTGAGGATTCTTCCCGAATTAGCTGGTTCATGGGTACCATAACTTCTGTTCAGGTTCTTGATCCTATACGATGGCCAAATTCCCCATGGCGACTTCTCCAGGTTACTTGGGATGAGCCAGATTTGCTACAAAATGTGAAGCGTGTTAGCCCTTGGCTGGTCGAATTGGTATCAAACATGCCAGTGATCCATCTCACACCCTTCTCTCCGCCGAGGAAGAAGGCGCGGCTTCCACAGCACCCAGACTTGTCCTTTGACGGTCACTTTGCAATACCAACCTTTTCAGGCAACCCCATTGGGCCAAGCAGTCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAAGATCTCTTTCAGATCTCCATCTTAACAAGAAACTGCACATGGGGCTGCTTCCATCCAATGTTCATCAGTTCAATGTGCATTCTGGGATTTCTAATGCCAATCTTATCAAGCATGAGATCAACAATGACAATTTGTCATGCTTGCTTACTATTGGAAATTCTAATAAGACTCTGGAGAAATCTGATAATGTGAAGAGATACCAGTTCTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCTCGAACCTGTTCTGTTGAGAATAAAGACAAAGCAAATTGCTTCTTTGGTAATTCTGAATCTGCACTTTCGCGGCAGTTTACACCAGAGAAATCTTCTTCTGCTGAGATTTCTTGGCAACTTGGCCCGGATACTGGTCATTGCAAGGTTTTCATGGAGTCAGAAGACGTGGGACGAACACTAGACCTTTCACGACTCGGTTCTTATGAGGAGTTATACAGGAGACTCGCCAACATGTTTGGAATTGAATGTTCTGATATGTTGAATCATGTCCTCTACCGTGATGCAACAGGTGCTGTTAAGCAAACTGGAGAAGAACCATTCAGTGATTTTATGAAAACAGCAAAACGGTTGACAATTCTGACAGATTCAGGCAGTAAAGATATGAGAAGGACCTGGATTACTGGAGCTCGGAATGGTGAACACGGAATAGATGCATCAAACAAGACTGGTCCCCTCAGCATATTCGCTTA 2078 0.4615 MKETEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQPQASVDFAASLGSRVPPLILCRVAAVKFLADPESDEVYARIRLIPLRNSEVDYDGDGVVESNGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGSETPSGWSPGPGNCVGPYGAFSVFLREENKVLRSGSGPGGNFSGRSRVRLESVMEAVRLAASGQPFEFVYYPRASTPEFCIKTAAVAAAMRTQWCAGMRFKMAFETEDSSRISWFMGTITSVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLTPFSPPRKKARLPQHPDLSFDGHFAIPTFSGNPIGPSSPLCCLSDNAPAGIQGARHAQFGRSLSDLHLNKKLHMGLLPSNVHQFNVHSGISNANLIKHEINNDNLSCLLTIGNSNKTLEKSDNVKRYQFLLFGQPILTEQQISRTCSVENKDKANCFFGNSESALSRQFTPEKSSSAEISWQLGPDTGHCKVFMESEDVGRTLDLSRLGSYEELYRRLANMFGIECSDMLNHVLYRDATGAVKQTGEEPFSDFMKTAKRLTILTDSGSKDMRRTWITGARNGEHGIDASNKTGPLSIFA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00255 692 SUPERFAMILY DNA-binding pseudobarrel domain 109 218 IPR015300 -
Bva09g00255 692 Gene3D - 113 217 IPR015300 -
Bva09g00255 692 Gene3D - 579 665 - -
Bva09g00255 692 Gene3D - 317 389 - -
Bva09g00255 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva09g00255 692 SMART B3_2 115 217 IPR003340 GO:0003677
Bva09g00255 692 CDD B3_DNA 114 215 IPR003340 GO:0003677
Bva09g00255 692 PANTHER AUXIN RESPONSE FACTOR 2 669 - -
Bva09g00255 692 Pfam B3 DNA binding domain 115 216 IPR003340 GO:0003677
Bva09g00255 692 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva09g00255 692 ProSiteProfiles PB1 domain profile. 580 660 IPR000270 GO:0005515
Bva09g00255 692 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00255 Bva-Chr9 1299444 1303059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00255 4 664 B3 DNA Binding Superfamily AT4G30080 60.266 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva09g00255 B3 1.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00255 - - qsu:111995036 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00255 09 1299444 1303059 Bva07g02393 07 19431631 19435142 BWGD
Bva09g00255 09 1299444 1303059 Bva09g00255 09 1299444 1303059 ECH
Bva04g02575 04 23053193 23056707 Bva09g00255 09 1299444 1303059 ECH
Bva13g01956 13 15746570 15755995 Bva09g00255 09 1299444 1303059 ECH
Bva09g00255 09 1299444 1303059 Bva07g02393 07 19431631 19435142 ECH