Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00251 ATGGCGATGGCTTTGGCCCAACACAGAGAAAGCAGCAGTGGGAGCATCAGCAAGCACCTTGATGCTGGCAAGTATGTCCGCTACACGGCTGAGCAGGTTGAAGCGCTTGAAAGGGTTTATGCTGAGTGCCCCAAGCCCAGCTCCTTGCGAAGGCAGCAATTGATCCGAGAGTGCCCCATTCTTTGCAACATCGAGCCCAAGCAGATCAAGGTTTGGTTCCAGAATCGCAGGTGCAGAGAGAAGCAGAGAAAAGAGGCTTCCCGGCTTCAAACTGTGAACAGGAAACTGACAGCAATGAACAAGCTATTGATGGAGGAAAACGATCGGTTGCAAAAACAGGTGTCGCAACTCGTTTGTGAGAATGGGTATATGCGGCAGCAATTGCAAACTGCATCAGGTGCAACTACTGATGCAAGTTGTGATTCGGTGGTTACTAATACTCAGCATTCTCTAAGAGATGCTAATAACCCTGCTGGACTCCTATCAATTGCTGAGGAAACCTTGGCAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAagCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGCGGTCTCGTTAGTTTAGAGCCCACAAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTTCGGGATGGTCGGAGCCTAGAAGTTTTTACAATGTTCCCTGCTGGAAATGGAGGGACGATTGAACTTGTCTACACACAGGCATATGCTCCAACTACGCTGGCTCCTGCCCGGGATTTCTGGACTCTGAGATACACGACAACTTTAGAAAATGGCAGTCTTGTGgtcTGTGAGAGGTCGCTATCCGGTTCTGGTGCTGGCCCTAATGCAGCAGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCCAGTGGTTACTTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATTGTAGACCACCTGAATCTGGAGCCATGGAGTGTGCCAGAGGTGCTGCGACCCCTTTATGAATCCTCAAAAGTGGTAGCTCAGAAAATGACTATTGCGGCTCTTCGCTATATCAGACAAATAGCTCAAGAAACAAGTGGTGAAGTGGTATATGGTTTAGGCAGGCAGCCTGCTGTCCTGCGAACGTTCAGCCAAAGATTGAGCAGAGGATTTAACGATGCTGTCAATGGATTCAGTGATGATGGCTGGACTGTTCTGAATTGTGATGGTTCTGAGGATGTAATTATTGCAGTCAATTCAACTAAGAATTTGAGTGCCACTTCAAATCCTGCTAGTTCCCTTACATATGTTGGAGGAATTCTATGTGCAAAGGCTTCCATGTTGCTCCAAAATGTCCCTCCTGCAGTTTTAGTTCGCTTTTTGAGGGAGCACCGCTCAGAGTGGGCTGATTTCAATGTTGATGCCTATGCTGCAGCATCACTTAAAGCTAACTCCTATGCTTATCCTGGAATTAGGCCTACAAGGTTCACAGGCAGCCAAATTATCATGCCTCTTGGCCATACGATTGAACATGAAGAGACTCTTGAAGTCATTCGGCTAGAAGGTCATTCTATTGCTCAAGAAGATGCTTTTGTTTCAAGGGATATTCATCTCTTACAGatATGTAGTGGAATTGATGAGAATGCTGTGGGAGCTTGTTCTGAGCTCATATTCGCTCCAATAGATGAAATGTTCCCTGATGATGCACCATTGGTGCCTTCTGGTTTCCGCATCATTCCTTTGGATTCAAAAGCAgGTGATAAAAAGGATCAAGCGCCTACAAATCGTACCCTGGATCTGACATCTGGTCTTGAAGTTGGCCCTGCATCAAATCATGCCTCAGGAGATGCATCATGTCATAACACTCGATCAGTGTTGACTATTGCCTTTCAGTTTCCTTTCGACTCTAGTTTGCAGAATAATGTTGCAATTATGGCACGCCAGTATGTCCGTAGCGTGATTTCCTCTGTGCAGAGGGTTGCCATGGCTATATCTCCATCTGGTATAAATACAAGCGttggaccaaaactctctCCTGGTTCTCCGGAAGCTCTTACACTAGCTCAGTGGATCTGTCAGAGCTATAGTTACTATTTGGGAGCGGAATTACTGAGATCTGAGTCTCAGATTGGTGACTCTGTGTTGAAGCATCTATGGCAGCACCAGGATGCGATTTTGTGCTGTTCGTTGAAGTCGCTACCCGTGTTCATCTTTGCAAACCAGGCGGGTCTTGACATGCTAGAAACAACAATGGTGGCTTTACAAGACATTACgttagataaaatatttgatgagGCTGGACGCAAGGCATTATTTGCGGATTTTGCTAAGTTAATGCAGGAGGGGTTTGCTCATTTGCCAGGTGGGATCTGCATGTCCACGATGGGGCGGCACGTTTCATATGAGCAAGCTATTGCATGGAAAGTGCTTGCTGCAGAAGATAACTCTGTTCATTGCTTGGCTTTCTCTTTCGTAAATTGGTCTTttgtatg 2525 0.461 MAMALAQHRESSSGSISKHLDAGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILCNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQQLQTASGATTDASCDSVVTNTQHSLRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDGRSLEVFTMFPAGNGGTIELVYTQAYAPTTLAPARDFWTLRYTTTLENGSLVVCERSLSGSGAGPNAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEPWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFSDDGWTVLNCDGSEDVIIAVNSTKNLSATSNPASSLTYVGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYAAASLKANSYAYPGIRPTRFTGSQIIMPLGHTIEHEETLEVIRLEGHSIAQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKAGDKKDQAPTNRTLDLTSGLEVGPASNHASGDASCHNTRSVLTIAFQFPFDSSLQNNVAIMARQYVRSVISSVQRVAMAISPSGINTSVGPKLSPGSPEALTLAQWICQSYSYYLGAELLRSESQIGDSVLKHLWQHQDAILCCSLKSLPVFIFANQAGLDMLETTMVALQDITLDKIFDEAGRKALFADFAKLMQEGFAHLPGGICMSTMGRHVSYEQAIAWKVLAAEDNSVHCLAFSFVNWSFV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00251 841 Pfam START domain 163 370 IPR002913 GO:0008289
Bva09g00251 841 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Bva09g00251 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 841 - -
Bva09g00251 841 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Bva09g00251 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 841 IPR044830 GO:0003700
Bva09g00251 841 Gene3D - 16 90 - -
Bva09g00251 841 SMART HOX_1 21 87 IPR001356 GO:0003677
Bva09g00251 841 SUPERFAMILY Bet v1-like 162 374 - -
Bva09g00251 841 CDD homeodomain 24 84 IPR001356 GO:0003677
Bva09g00251 841 MobiDBLite consensus disorder prediction 594 628 - -
Bva09g00251 841 SMART START_1 162 372 IPR002913 GO:0008289
Bva09g00251 841 Gene3D - 197 379 IPR023393 -
Bva09g00251 841 Coils Coil 93 120 - -
Bva09g00251 841 Pfam MEKHLA domain 697 840 IPR013978 -
Bva09g00251 841 ProSiteProfiles START domain profile. 153 381 IPR002913 GO:0008289
Bva09g00251 841 CDD bZIP 76 115 - -
Bva09g00251 841 SUPERFAMILY Homeodomain-like 23 86 IPR009057 -
Bva09g00251 841 CDD START_ArGLABRA2_like 157 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00251 Bva-Chr9 1273043 1279859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00251 1 841 Homeobox Transcription Factor Family AT5G60690 81.979 0.0 1437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva09g00251 START 1.5e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00251 K09338 - gmx:100804870 1517.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00251 09 1273043 1279859 Bva09g00251 09 1273043 1279859 ECH
Bva09g00251 09 1273043 1279859 Bva07g02396 07 19456185 19462601 ECH