Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00247 ATGCCGCCGAAGTTCGACCCAACCCAGGTTGTCGACGTCTACGTTCGAGTCACCGGAGGCGAGGTTGGTGCCGCGAGCTCTCTCGCTCCTAAGATAGGTCCACTTGGTCTTTCTCCGAAAAAGATTGGAGAAGATATTGCTAAAGAGACAGCAAAGGACTGGAAGGGATTGAGGGTTACCGTGAAGCTCACGGTCCAGAACCGTCAAGCTAAGGTTTCGGTGGTGCCATCTGCTGCTGCCTTAGTCATCAAGGCTTTGAAAGAACCTGAACGAGACCGCAAGAAGACGAAGAACATAAAGCATAATGGCAACATATCCCTGGACGATGTAATCGAGATTGCTAAAATTATGAGTCCTAGGTCGATGGCTAAGGATCTTTCTGGTACTGTGAAGGAGATCTTAGGAACGTGCGTCTCTGTTGGCTGCACCGTGGATGGGAAGAATCCCAAGGACTTGCAGCAGGAGATCACTGATGGAGATGTTGAAATCCCTTCGGATTG 500 0.5 MPPKFDPTQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMSPRSMAKDLSGTVKEILGTCVSVGCTVDGKNPKDLQQEITDGDVEIPSD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00247 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Bva09g00247 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Bva09g00247 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Bva09g00247 166 MobiDBLite consensus disorder prediction 146 166 - -
Bva09g00247 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Bva09g00247 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 - -
Bva09g00247 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Bva09g00247 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Bva09g00247 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 IPR000911 GO:0003735|GO:0005840|GO:0006412
Bva09g00247 166 Gene3D - 82 164 IPR036769 -
Bva09g00247 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Bva09g00247 166 Gene3D - 1 81 IPR036796 -
Bva09g00247 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00247 Bva-Chr9 1250410 1251170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00247 1 166 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 88.554 4.36e-107 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00247 K02870 - sind:105170299 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00247 09 1250410 1251170 Bva09g00247 09 1250410 1251170 ECH
Bva03g02236 03 19510047 19512966 Bva09g00247 09 1250410 1251170 ECH
Bva04g02580 04 23072888 23073647 Bva09g00247 09 1250410 1251170 ECH
Bva13g01953 13 15740400 15741289 Bva09g00247 09 1250410 1251170 ECH