Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00246 atggCGAAAGACGTAGAGGTTCAAGAACAAGGTGGAGAGTACTCGGCCAAAGACTACCACGACCCACCACCGGTACCCTTGATCGACGTAGAGGAGCTGTCAAGGTGGTCTTTCTACAGAGCCCTCATCGCCGAGTTCATAGCAACGCTTCTCTTCCTCTACGTCACTGTCTTGACTGTTATTGGATACAAACACCAGACCGATGTCCCCAACGGCGAGTGTGAGGGAGTTGGCATTCTGGGTATCGCTTGGGCCTTCGGCGGCATGATTTTCATCCTCGTTTACTGCACCGCCGGTATCTCTGGTGGACACATCAATCCTGCTGTGACTTTCGGGCTCTTTCTGGGAAGGAAGGTGTCGCTGATCAGAGCTGTTCTGTACATGGTAGCACAGTGCGCTGGTGCTATTTGCGGTACTGGACTCGTCAAGGCCTTCCAGAAATCTTACTACAACAGGTACGGTGGTGGGGCCAACGAAGTTGCCGGTGGCTACAAGAAGGGTACCGCTCTGGGTGCCGAGATCATCGGTACCTTTGTTCTCGTCTACACCGTCTTCTCCGCCACTGATCCTAAGAGGAACGCCAGAGACTCCCATGTTCCCGTGTTGGCACCACTGCCCATTGGGTTCGCTGTGTTCATGGTGCACCTGGCTACCATCCCCATCACCGGTACTGGCATCAACCCAGCAAGGAGTTTTGGAGCAGCTGTCATCTTCAACCAAGATAAACCTTGGGATGACCATTGGATTTTCTGGGTTGGCCCATTTGTGGGAGCTGCCGCAGCTGCATTCTACCACCAGTACATTCTTAGAGCTGCAGCCATTAAAGCTCTTGGATCTTTCAGGAGCAACgctta 854 0.5269 MAKDVEVQEQGGEYSAKDYHDPPPVPLIDVEELSRWSFYRALIAEFIATLLFLYVTVLTVIGYKHQTDVPNGECEGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAVLYMVAQCAGAICGTGLVKAFQKSYYNRYGGGANEVAGGYKKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNQDKPWDDHWIFWVGPFVGAAAAAFYHQYILRAAAIKALGSFRSNA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00246 284 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva09g00246 284 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva09g00246 284 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva09g00246 284 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva09g00246 284 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva09g00246 284 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva09g00246 284 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Bva09g00246 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 284 IPR034294 -
Bva09g00246 284 CDD MIP 40 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva09g00246 284 PANTHER AQUAPORIN PIP2-4-RELATED 1 284 - -
Bva09g00246 284 SUPERFAMILY Aquaporin-like 32 270 IPR023271 -
Bva09g00246 284 Gene3D Glycerol uptake facilitator protein. 25 284 IPR023271 -
Bva09g00246 284 Pfam Major intrinsic protein 32 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva09g00246 284 TIGRFAM MIP: MIP family channel proteins 44 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00246 Bva-Chr9 1245376 1247055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00246 1 284 Major Intrinsic Protein MIP AT2G37170 80.420 6.63e-171 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00246 K09872 - gmx:100818032 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00246 09 1245376 1247055 Bva07g02403 07 19502084 19503682 BWGD
Bva09g00246 09 1245376 1247055 Bva09g00246 09 1245376 1247055 ECH
Bva03g01083 03 9962285 9965771 Bva09g00246 09 1245376 1247055 ECH
Bva04g02581 04 23076548 23078042 Bva09g00246 09 1245376 1247055 ECH
Bva13g01951 13 15735063 15736495 Bva09g00246 09 1245376 1247055 ECH
Bva09g00246 09 1245376 1247055 Bva07g02403 07 19502084 19503682 ECH