Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00238 ATGAGTTCTGAGGAAAAACCTGTGGATGAATGGCATGATGCTGCTTCCTGCAAAAGAACAGTTTCTCTTCCAGTTGAGAAGGTTGATATTCCAATGGGAGTAACTGAAGAATCCACACATGTTAGTCATGGGAAGCAACGGAATCTTGTCCTGGAGATTCCCCCACGAACAACAGAAGAGTCTTCTCAAGATTTTGTCAAAATCAAGATGCCTCTGACACCAAGTCCCTCTCCCACTCCAAAGAGAGTGAATTTTCTTGTGTCTTCTCGCTCTGTTGATCCTCCCAATACTAATACTAATGCTCCAGTGCCTTCCTTGCAAAGAGCCAAATCTTCCATAAGAAGTTTATTGCCAAAATTGAGCTTCATGTATAGGTCATCAGATTCTGAAAAAGGTCCTACTGCAGCTCTGGAAAGTTCCTCTTCAGGCCTTCAAGAAAAACCTTCAATATCGAGATCATTATCTCGTACTAAGATATTTACTCCTAGGATTAAGAGAACATCATCATTGCCAGTAGATCAAATTCCATGCTCAAATCCAGAATCTGCTCATGGTGGAGGTGTTCAGAGAAGAGAGTGCCAAGTGCAGATAGCACGCTCGCTTTCAGTGCCTGtcatcaacaaagaaaataacttgaGGAGATTCGATTCATTTATCCGTGTTATCCCTTCCACCCCTCGAGTGAAGGAAGGAATTGAAACGTTAACCAAATCCCCAATAGCGGATTCTGAAAACGATGACTCGGATGCTGAAGATATACCTGAAGAAGAGGCTGTGTGTAGAATTTGTCTAGTTGAGCTATGCGAAGGAGGTGATACCTTCAAAATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCAATTAAATGGTTCAGCATCAAGGGTAACAAGATCTGTGATGTGTGCAAGGAGGAGGTTCGAAACCTACCAGTCACTCTCTTACGGATCCAAAGCGTCCGCACTCGAAATACTGGAGGAAGTAGGTCTCAGCAGGCAGATGTAAATGGATACAGGGTTTGGCAGGAGGTGCCGGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGTTATTGGTTGGAAAAATGGGTACTGGTGCAATTGCCATATCTCTGCCATTTTCCTGTGTACTGGGTCTACTGTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTTATCTGGATCTACGCATCTGTCCAGTTTGCTCTGGTGGTTCTCTTTGCACATTTGTTTTACTCCTTGATTCATGTGCAAGCAGTTCTGTCAATCCTTCTTGCGACATTTGCTGGGTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTTGAGTTTTTCAAATGGAGGAGAAGATGGCAAGCAGATCGGCATCATGGTTCTCAGGTGATGACACGAGCAGGACATAACCATATAACCCTAAATATACCACGTGCCGGTCCTCCCAATCACACCTA 1481 0.4382 MSSEEKPVDEWHDAASCKRTVSLPVEKVDIPMGVTEESTHVSHGKQRNLVLEIPPRTTEESSQDFVKIKMPLTPSPSPTPKRVNFLVSSRSVDPPNTNTNAPVPSLQRAKSSIRSLLPKLSFMYRSSDSEKGPTAALESSSSGLQEKPSISRSLSRTKIFTPRIKRTSSLPVDQIPCSNPESAHGGGVQRRECQVQIARSLSVPVINKENNLRRFDSFIRVIPSTPRVKEGIETLTKSPIADSENDDSDAEDIPEEEAVCRICLVELCEGGDTFKMECSCKGELALAHQECAIKWFSIKGNKICDVCKEEVRNLPVTLLRIQSVRTRNTGGSRSQQADVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHLFYSLIHVQAVLSILLATFAGFGVVMSGSSILVEFFKWRRRWQADRHHGSQVMTRAGHNHITLNIPRAGPPNHT 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00238 493 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 16 474 - -
Bva09g00238 493 CDD RING_CH-C4HC3_MARCH 260 308 - -
Bva09g00238 493 MobiDBLite consensus disorder prediction 126 152 - -
Bva09g00238 493 ProSiteProfiles Zinc finger RING-CH-type profile. 252 314 IPR011016 GO:0008270
Bva09g00238 493 MobiDBLite consensus disorder prediction 88 110 - -
Bva09g00238 493 SMART ringv_2 259 308 IPR011016 GO:0008270
Bva09g00238 493 Pfam RING-variant domain 260 307 IPR011016 GO:0008270
Bva09g00238 493 PANTHER OS02G0165000 PROTEIN 16 474 - -
Bva09g00238 493 MobiDBLite consensus disorder prediction 132 152 - -
Bva09g00238 493 SUPERFAMILY RING/U-box 256 311 - -
Bva09g00238 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 315 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00238 Bva-Chr9 1212254 1217404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00238 244 314 C3H Transcription Factor Family AT2G37950 45.833 5.88e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00238 - - gmx:100815566 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00238 09 1212254 1217404 Bva07g02411 07 19532333 19536209 BWGD
Bva09g00238 09 1212254 1217404 Bva09g00238 09 1212254 1217404 ECH