Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00227 ATGATGTCTCATGAAGCGCTTTCGTCTTCTCCCGCTATTAGAGGATTCGTTCAAGACCCCAACTCAAACCCTAGCTCTACTACTAACCCTAATTCAGATCCAGTTGtcaagaggaagagaaatctTCCAGGAACACCAGATCCAGATGCAGAAGTGATAGCTCTATCGCCGAAGTCTCTGATGGCGACGAACCGATTCATCTGTGAAATCTGCAATAAGGGTTTTCAGAGAGACCAGAACTTGCAACTTCACCGACGTGGACACAACCTTCCGTGGAAGCTCAAGCAGAGAACCAACAAAGAAGTGATCAGGAAGAAGGTGTACCTATGCCCCGAAAAGAGCTGCGTGCACCATGACCCCTCTAGAGCCCTCGGAGACCTCACGGGGATAAAGAAACACTACAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAGTGTTCCAAGAAATACGCAGTTCAATCGGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTATAGATGTGACTGTGGCACCCTTTTCTCCAGGAAGGACAGCTTCATAACACATAGAGCATTCTGTGATGTCTTGGCCGAAGAAAATGCCAGAATAAAAGTTCCGGCACCCTTTACGAGCTTCACAACTGAGTTAATGAACGGAGCAAGTCTCAATCATCCAACACCCAGAATCCCTCAGCTTCTAGGTGGGTTTCATCCTGAATTTGGTGGGTCAGAAGCATTGGGGAATTTTTCAGATGCGGATGAGCAGAAGCTAAGGCTGCCTTTGTGGCTAGACCATGCCAATTCTCAACTTAACCCACTTGGCGTTTCAAGCAATTCCAATGCTTTTTCAGGAGCAAATCCTGCTTGTAGTTTGCCTGATTTAGTGCAAACGATGAATATGTTTGGGTCATCGTCACAGCCGCAGACGCAGTGGCTGAACAAATTCCCAGAAGCATCATATGCAAGTGCCAATTTAACCATGTCTGCACTGCCACATGGGCTGAAACAAGAGCAAGAAGAAGACAAAGCAAGCTTGTCACATAGAGTGAGCACTTTGTTTTCTAGTGATGAGGCACAGGGAGGCCCAGCTCACATGTCAGCTACTGCACTCTTGCAGAAAGCAGCCCAGATGGGATCTACAAGGAGCAAcagcagcaacaacaacaacaatgaCGCAGCATTCAACTCTAGCAACATCTTTGGGTTGATGGGCCCAGCTCTCTCAAACACCAGCAGATCAACTAGTGTTGAGGTTCAGAAATTTTTCAACCAGGCAAATCAAACAGAAAACTTGAACGGGTTCACGGTGAATTCCCAAACAAGCTACAACCGCGTTGGAGGTGGGGTATTACTGAATGATTCCTACTCAAGCTCGTTTGTGAATGCTGCAAGCAAGAATTTGGATCATACGGTAATGGCGGTGAATGAAAACAGAAGGCAAAACCTAGCAGCAATAATGGGAAAGCATCTGCATTCAAGCTCAAATGAAGATGAGCTGAGTTTAACGAGGGACTTTCTAGGAGTTGGAGGTGATCACCCAATGAGCAGGCCATTTCTGCAGCAAGAGCTGGCTAACTTGAATGCAATTGGCTTGGCCATGGACGTGAGCCACTATGGTAGGGGATGCAGAGTTGGACCCAGCAAGGAAGCGAGTTG 1649 0.4603 MMSHEALSSSPAIRGFVQDPNSNPSSTTNPNSDPVVKRKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVIRKKVYLCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDVLAEENARIKVPAPFTSFTTELMNGASLNHPTPRIPQLLGGFHPEFGGSEALGNFSDADEQKLRLPLWLDHANSQLNPLGVSSNSNAFSGANPACSLPDLVQTMNMFGSSSQPQTQWLNKFPEASYASANLTMSALPHGLKQEQEEDKASLSHRVSTLFSSDEAQGGPAHMSATALLQKAAQMGSTRSNSSNNNNNDAAFNSSNIFGLMGPALSNTSRSTSVEVQKFFNQANQTENLNGFTVNSQTSYNRVGGGVLLNDSYSSSFVNAASKNLDHTVMAVNENRRQNLAAIMGKHLHSSSNEDELSLTRDFLGVGGDHPMSRPFLQQELANLNAIGLAMDVSHYGRGCRVGPSKEAS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00227 549 Gene3D Classic Zinc Finger 45 119 - -
Bva09g00227 549 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 508 - -
Bva09g00227 549 MobiDBLite consensus disorder prediction 14 35 - -
Bva09g00227 549 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Bva09g00227 549 SMART c2h2final6 143 163 IPR013087 -
Bva09g00227 549 SMART c2h2final6 66 88 IPR013087 -
Bva09g00227 549 SMART c2h2final6 108 138 IPR013087 -
Bva09g00227 549 Gene3D Classic Zinc Finger 121 200 - -
Bva09g00227 549 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Bva09g00227 549 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Bva09g00227 549 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Bva09g00227 549 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 25 508 - -
Bva09g00227 549 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00227 Bva-Chr9 1158385 1160903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00227 36 376 IDZ Gene Family AT3G45260 54.098 3.47e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva09g00227 zf-C2H2_jaz 8.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00227 K25870 - qsu:112038579 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00227 09 1158385 1160903 Bva07g02423 07 19587407 19590312 BWGD
Bva09g00227 09 1158385 1160903 Bva09g00227 09 1158385 1160903 ECH