Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00221 ATGGAAATTGATCTGAACCATTCAGTGAGTGAGGTCGAGAAGAATGCATTAGCATTATGCAATGAAGAGTTTGAGAAAGGCGCTTGCCTTTGTTTTTTGTCCTCTTCGACTTGTTCCTCTTGTTCTAGTTCTTCTTCAGTTCATGTATCCTCTTCTTACATGGAGCTTTGGCATGCTTGCGCTGGCCCCCTCACCTCCCTGCCTAAGAAAGGAAATGTGGTCGTCTATTTTCCACAAGGTCACTTAGAACAGGCGGCCTCTTTCTCACCTTTGGAGATACCTACCTATGATCTTCAACCACAGATCTTTTGCAAGGTTGTCAATGTTCAGCTACTTGCCAATAAGGAGAATGATGAGGTTTATACGCAGGTTACCTTGCTTCCCCAGGCAGAGtTGGCAGGGTTGCATTCAGAGGGGAAGGAGCTTGAGGAATTGGGAGATGATGAAGAGGGAAATGGAGGATCACCTACAAAATCAACTCCTCACATGTTCTGCAAGACGCTTACAGCTTCTGATACCAGCACCCATGGGGGCTTCTCTGTTCCTCGTAGAGCAGCCGAAGACTGTTTTCCTCCTCTGGATTACAAACAGCAGAGACCCTCTCAAGAGCTGGTCGCAAAGGACCTGCATGGAGTGGAGTGGAAATTTCGCCATATATACAGAGGTCAGCCGAGGCGACATCTGCTAACTACTGGCTGGAGTATTTTTGTTAGTCAGAAGAGTCTCGTTTCTGGCGATGCGGTGCTCTTTCTAAgGGGTGAAAATGGAGACTTGAGATTGGGAATCAGAAGAGCTGTTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGCACCCAGAATTGTTAtcccaattttctttctccagtGGCTAATGCTATATCCACTAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCGAGTCATGCAGAGTTTGTTGTGCCCTAccaaaaatatgtgaaaagcATAAAGAATCCAGTGACCATTGGAACGAGATTCAAAATGAAGTTTGAAATGGATGAAGCTAGCGAAAGAAGGTGCAGTGCTGGTATAGTGAGTGGTATTGGTGATTTGGATCCCTATCGATGGCCTAAATCAAAATGGAGACGCTTGATGGTGAGATGGGATGAGGATATCTCTAGCAATCATCAAGAACGGGTTTCTCCATGGGAGATTGACCCTTGTGTTTCTCTCCCTCCATTGAGCATTCAGTCTTCCCCAAGACTGAAGAAATTGCGGACAAGTCTGCAGGGTGCCTCGCCCAGCCACTTCATCACTGGAGGCTGTGGGTTTATGGACTCCGAGGAGTCTATAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTGCGCCGCTCTATTATGGACGTGACTCAATAACCAACCGGCCAGATTTTGAGATGAATTCTACTAGTCATCAAAATCTTGCATCAACTGGCATAATAAACACTAGAGCTACTGAAGTCATGAGAACTCAAGCTCAGGCTCCCCCTTTTACTTATGCAGGCTTAGCAGAAACTAACAGGCTACCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCCCTGACAGTGACAGGAAAGGTTGACTTTAACGTTGGTGCTTATGGTTGGGGTAAACCCAATGTGAGCTGCAAAACTTTCAATATGCATAAGGCAACCAAACCCGACTTTCACCCTTTAGGACCACAGCTCATTCAAACTGCTTATTTTCCTTATGGTGACATTAACATTCACAAAGATGGCAAAGGCAGTATCTTGTGCTTTAAACCAAGTAATTTCCAGAGGGAGAATGTGCCACTTAACACCTGTTCTACTCACAGAAATGAAGATCTTCCGAACGAGCAGAAGCTGCAGGACAATGTCTCTGCTGCAAATTTGGGGGGAAATATGTTGATTTCGAATGAAGACAATTTAAAAGGTAAGGTAAATGGCAATGCCTGTAAACTATTTGGGTTTCCCTTGTCTGGGGAAAGTACAAGTCAGAATTCTGCTGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCCATTGATCTCTCGAGGTTGAGCAGCTACAATGACCTGGTGTGTGAATTAGAGAGACTATTTGGCATGGAAGGGCTTCTAAGAGATCCCAATAAGGGATGGAGGATCCTCTACACCGACAGCGAAAAAGACATCATGGTTGTAGGGGATGATCCATGGCACGAATTCTGCAGTGTGGTAACCAAAATACATATCTATAACCAAGAAGAAGTAGAGAAGATGACGATTGGAATGATGACGAGTGATGATACCCAGAGCTGTTTGGAGCAGGCACCATTGATAATGGAAGCTTCCAAGTCTTCTTCGGTGGGGCAGCCGGATTCTTCTCCCACAGAAGTCAGGGTCTA 2408 0.4431 MEIDLNHSVSEVEKNALALCNEEFEKGACLCFLSSSTCSSCSSSSSVHVSSSYMELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPLEIPTYDLQPQIFCKVVNVQLLANKENDEVYTQVTLLPQAELAGLHSEGKELEELGDDEEGNGGSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKSLVSGDAVLFLRGENGDLRLGIRRAVRPRNGLPESIVGTQNCYPNFLSPVANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKNPVTIGTRFKMKFEMDEASERRCSAGIVSGIGDLDPYRWPKSKWRRLMVRWDEDISSNHQERVSPWEIDPCVSLPPLSIQSSPRLKKLRTSLQGASPSHFITGGCGFMDSEESIRSPKVLQGQENTGFAPLYYGRDSITNRPDFEMNSTSHQNLASTGIINTRATEVMRTQAQAPPFTYAGLAETNRLPRVLQGQEICPLKSLTVTGKVDFNVGAYGWGKPNVSCKTFNMHKATKPDFHPLGPQLIQTAYFPYGDINIHKDGKGSILCFKPSNFQRENVPLNTCSTHRNEDLPNEQKLQDNVSAANLGGNMLISNEDNLKGKVNGNACKLFGFPLSGESTSQNSAAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLVCELERLFGMEGLLRDPNKGWRILYTDSEKDIMVVGDDPWHEFCSVVTKIHIYNQEEVEKMTIGMMTSDDTQSCLEQAPLIMEASKSSSVGQPDSSPTEVRV 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00221 802 PANTHER AUXIN RESPONSE FACTOR 13 790 - -
Bva09g00221 802 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Bva09g00221 802 ProSiteProfiles PB1 domain profile. 673 755 IPR000270 GO:0005515
Bva09g00221 802 Gene3D - 668 762 - -
Bva09g00221 802 CDD B3_DNA 162 264 IPR003340 GO:0003677
Bva09g00221 802 Gene3D - 162 266 IPR015300 -
Bva09g00221 802 SUPERFAMILY DNA-binding pseudobarrel domain 156 275 IPR015300 -
Bva09g00221 802 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 790 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva09g00221 802 SUPERFAMILY CAD & PB1 domains 666 752 - -
Bva09g00221 802 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva09g00221 802 SMART B3_2 164 266 IPR003340 GO:0003677
Bva09g00221 802 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Bva09g00221 802 Gene3D - 328 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00221 Bva-Chr9 1124976 1129454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00221 49 802 B3 DNA Binding Superfamily AT5G60450 61.024 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva09g00221 AUX_IAA 8e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00221 - - gmx:100812909 1207.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00221 09 1124976 1129454 Bva07g02427 07 19611463 19616440 BWGD
Bva09g00221 09 1124976 1129454 Bva09g00221 09 1124976 1129454 ECH