Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00205 ATGCAGACCCCCAAGTCAAGAGGTAGCTCTTCCTCTGAAGTGCCCCAAAAGGTGTCACCTCGAGCTGTGCGCCAACTCAGACCTGCCGCCCTAGAAACTAATTCTGCATCATCTATTACTCAAGCTAGTAAAACATCAAAAGAGAGAAGTCCCAAAATTAATGAGCGCAGATCGCCCAGAAGTCCAGTTCCGGAGAGAAAGCGCCCCAGCAGAATATCTGAATTAGAGTCTCAGATTTCTCAACTTCAGGAGGATTTGAAGAATCTGAGGGAACAGCTCATTTTATCTGaatcatgcaaaaaaaaagcTCAGCAAGATGCTGAGGAGTCCAGGGAGCAATTGTTGGCCCTATCTGCAAAGCTTGAAGATTCTCAAAAGCAGCTTGCAGAGTTGTCCGCTTCAGAAGAAGCTCGTGTTATTGAGCTCCAACAAATCTCAGAAGAACGTGATAAGGCATGGCAATCCGAGCTCGAATCTGCTCAAAAGCAGCACTTGATGGACGCTGCATCCCTGGCCTCTGCCATGAATGAAGTTCAGCAGCTTGAGATTCAGCTTGAATTGGTAACGAACTCTGAGAATGCACAAACCCAACATGCAGAAACCACAGACGTGGaacaaaaaaatctgaaacaaAACTTAGCAGAAGCTCTTTCTCTTGTGGAAAACATGAAAGGCCAACTGAAGGATTGCAAAGAATCAGAAGCTCAGGCCCGAGCTTTGGTTGTTGAAACTTTCCTGCAACCTGAGGCTGCAGAAAGAACTGTGGAGTTTCTAAGGGCTGATGCTGCTAAAGCTATAGAAGGTTACAACTCGATTGCTTTAGAGTTAGAGCAGTCAAGAGCACGGGTGAGCTCACTAGAATCACTAGTAAGCAAACTTAATAGAGACTTCATGAGTGAATGTTGCCATGCTGGAAATGTTGCGAATGGCTATAACCTTGCTTATGAACCTGAGAAGTTGGAAGAGGGCGAGGAACCAAATCAGATTAAAACACAACTTTGTTCCTTGAAGTCCGAGGTACGACAACTTAGATCTGCCTTAGAAACTGCTGAGAGTAAATACCAAGAAGAACAGATCCGGAGCACGGTACAGATAAGGAATGCCTATGAAATGGTAGAGCAGGTAAAATCAGAATCAAGTCAGCGGGAATCTGAGCTAGTGGCTGAactgaagaaaacaaaatctgaCATTGAAGAATTCAAGGCTAATCTGATGGATAAGGAAACTGAGTTGCAAGGCATTGTAGAGGAGAATGAGGGTTTGAATTTGAAGCTTGAAAAGAGCATGTCATCTCAGAGAGAAGATAACCTTAAAAGATTAGACGAACGCGTAGCTGAATTGAAGGCTGATCTGATGGATAAGGAGACCACATTGCAGAGTATATCAGAAGAGAATGAAATGCTTAAATCGGAGATCAACAAGAGGCTTAGTGATGGTGGCAAAGTGAGAGGGGAAGTGGCTGCAGAAGTAGAGGCAGCAAAGGCAGCTGAACGCGAGGCTCTCATGAAACTTGGGAGTGTGATGGAGGAAGCGGATAGAAGCAAGGTGAAGGCAACAAGGGTGGCGGAGCAGCTGGAAGCAGCACAAAAAGCAAACTCAGAAATGGAAACAGAACTGAGAAGGCTGAAGGTGCAGTCTGATCAGTGGAGGAAGGCTGCAGAGGCAGCAGCCGCTATGCTTTCAGCAGGAAACAATGGGAAGCTCACAGAACGAAGCGTGTCTTTGGACAGCCACTATAACCATATGGAGAGGTGTTCTCCTTATCCTGAAGACATTGATGATGATTTTCACaggaagaaaaatggcaaCATGCTGAAGAAGATTGGCGTATTATGGAAGAAGCCTCAAAAGATAGGGTTTACGATTGTGTTCTCGTTGGCGGCCTTAGCACTCAGCAGCACCTTCTCATTCTCGGTCCGGAACACAGAGGCTAGAGAACAGTTGGTTAACCGCACCGTCATCATGGGGAAAACACGTGGTATGGGAGCTGCCCGCAAGTTGAAGTCCCACCGAAGAAGGCAGAGGTGGGCTGACAAGTCATACAAGAAATCCCATCTTGGCAATGAATGGAAGAAGCCATTTGCGGTTCCTCTCATGCTAAAGAATGCTTGGATGACTGCCTTTTACAGTGGGATTGAGGCTAAGCAACCAAACTCTGCTATTAGAAAATGTGCTCGAGTACAGTTAATTAAGAATGGAAAGAAGATTGCAGCCTTTGTGCCAAATGATGGTTGCTTGAACTCTATCGAAGAAAATGATGAGGTGCTGATTGCAGGATTTGGACGAAAAGGGCACGCTGTGGGAGATATCCCTGGAGTCAGGTTCAAGGTTGTGAAGGTATCTGGGGTATCTCTACTGGCACTTTTCaaagagaagaaggagaagccAAGGTCTTA 2396 0.4424 MQTPKSRGSSSSEVPQKVSPRAVRQLRPAALETNSASSITQASKTSKERSPKINERRSPRSPVPERKRPSRISELESQISQLQEDLKNLREQLILSESCKKKAQQDAEESREQLLALSAKLEDSQKQLAELSASEEARVIELQQISEERDKAWQSELESAQKQHLMDAASLASAMNEVQQLEIQLELVTNSENAQTQHAETTDVEQKNLKQNLAEALSLVENMKGQLKDCKESEAQARALVVETFLQPEAAERTVEFLRADAAKAIEGYNSIALELEQSRARVSSLESLVSKLNRDFMSECCHAGNVANGYNLAYEPEKLEEGEEPNQIKTQLCSLKSEVRQLRSALETAESKYQEEQIRSTVQIRNAYEMVEQVKSESSQRESELVAELKKTKSDIEEFKANLMDKETELQGIVEENEGLNLKLEKSMSSQREDNLKRLDERVAELKADLMDKETTLQSISEENEMLKSEINKRLSDGGKVRGEVAAEVEAAKAAEREALMKLGSVMEEADRSKVKATRVAEQLEAAQKANSEMETELRRLKVQSDQWRKAAEAAAAMLSAGNNGKLTERSVSLDSHYNHMERCSPYPEDIDDDFHRKKNGNMLKKIGVLWKKPQKIGFTIVFSLAALALSSTFSFSVRNTEAREQLVNRTVIMGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAVPLMLKNAWMTAFYSGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNSIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00205 798 PANTHER INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 3 1 617 - -
Bva09g00205 798 ProSitePatterns Ribosomal protein S12 signature. 715 722 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva09g00205 798 PANTHER INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 2, CHLOROPLASTIC-RELATED 1 617 IPR029688 -
Bva09g00205 798 MobiDBLite consensus disorder prediction 1 74 - -
Bva09g00205 798 MobiDBLite consensus disorder prediction 30 47 - -
Bva09g00205 798 CDD Ribosomal_S23 680 795 IPR005680 GO:0003735|GO:0006412|GO:0015935
Bva09g00205 798 Coils Coil 72 134 - -
Bva09g00205 798 Coils Coil 171 191 - -
Bva09g00205 798 MobiDBLite consensus disorder prediction 1 18 - -
Bva09g00205 798 Coils Coil 206 233 - -
Bva09g00205 798 Coils Coil 508 552 - -
Bva09g00205 798 Coils Coil 276 296 - -
Bva09g00205 798 Pfam Ribosomal protein S12/S23 710 797 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva09g00205 798 Coils Coil 383 417 - -
Bva09g00205 798 Gene3D - 679 798 IPR012340 -
Bva09g00205 798 Coils Coil 430 471 - -
Bva09g00205 798 Coils Coil 340 360 - -
Bva09g00205 798 MobiDBLite consensus disorder prediction 48 73 - -
Bva09g00205 798 SUPERFAMILY Nucleic acid-binding proteins 674 796 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00205 Bva-Chr9 1039826 1047890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00205 655 798 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 85.417 7.64e-79 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00205 - - gmx:100798862 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00205 09 1039826 1047890 Bva07g02440 07 19694424 19700130 BWGD
Bva09g00205 09 1039826 1047890 Bva09g00205 09 1039826 1047890 ECH
Bva03g02430 03 20673522 20675800 Bva09g00205 09 1039826 1047890 ECH
Bva04g02613 04 23225122 23226844 Bva09g00205 09 1039826 1047890 ECH
Bva13g01915 13 15568280 15569754 Bva09g00205 09 1039826 1047890 ECH