LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva09g00193	ATGTTAGATCTTAATCTCAATGTGGATTCGATCGATTCGACTCAGAACGATGAATCTGTCATGTATCTCAACAAGTTTCCTGAAGTTTCTGGGAATCAAATGGCGGAATCGGGGACTTCCAATTCCTCTGTCGTCAATGCTGACGGGTCCAGCAATGGAGGAGGCGATGAAGACTCTTGCTCTACACGCACCGGCGACGTTTACACCTTCAATTTCGATATCCTTAAGGTGGATGGCGGGAACGAGGCCGCAACCAAGGAGCTGTTTCCGGTGACTGGGGCAAGTGGAGTGGACAGAGAGTCCGGGAATTGGCAGGGACAGTCTTCGTTGTCGTTTCCATCGAAGAAGAGCAGGATGGATCTCTCATTCGACGATCCAGGTGGAAACGGAGAGATGAAGATGGTTCAGGTTCAGCAACAACCTCGACAGCCCGTAAAGAAGAGCAGGAGGGGTCCAAGGTCTCGGAGCTCGCAGTACAGAGGGGTCACCTTCTATAGGAGGACCGGAAGATGGGAATCGCATATCTGGGACTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACTGCTCACGTCGCTGCTAGAGCCTATGACCGAGCTGCTATTAAGTTCAGGGGAGTTGACGCTGACATCAATTTCAACCTCAGTGATTATGAGGAGGATCTTAAGCAGATGAAGAATCTCAGCAAGGAGGAATTCGTGCACATACTTCGTCGCCAGAGTAGTGGTTTCTCAAGAGGGAGCTCAAAATACCGTGGCGTAACACTGCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATACCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTACGACAAGGCAGCTATCAAATGCAATGGAAGGGAGGCAGTTACTAACTTCGAGCCAAGTACATATGAAGGGGAAATGAACCCTGAGGCGGTCGATGAAGGTTGTAGTTACAATCTTGACCTCAATTTGGGCATAGCGACCACTCCATCATATGGCAATGGTTCCAGAGAAAAGAGGGGGCATCTTCAATTCCAACCTGATCCTTACGATATGCATGTCGGAAGAATTTCGAGGATGGAGAGCAACTTTGATTTAGGAATAGGTGATCCGTCTCTGAAAAGGCTTGTAGGAACTGAAGAGCGTCCTAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATCAGAATAGGTCCCTCACAAGGACTCCCTAACTGGGCGTGGCAGACGCGTGGCCAGGTCACTGCAACCCCAGTGCCACCGTTCTCAACTGCAGCATCATCAGGATTCTCGTTCTCAGCTACATTTCCGTCGAATTCGGTTTTCCCAACAAGATCTACAAACTCAATTCCACAGAGTCTCTGTTTCACAGCATCCGGTGCAGCTGGCGCCAACTCATCTCAGTACTATTACCAAATGAAGTCCCCTCGGCCTCAGGCACCCCCCTA	1472	0.4946	MLDLNLNVDSIDSTQNDESVMYLNKFPEVSGNQMAESGTSNSSVVNADGSSNGGGDEDSCSTRTGDVYTFNFDILKVDGGNEAATKELFPVTGASGVDRESGNWQGQSSLSFPSKKSRMDLSFDDPGGNGEMKMVQVQQQPRQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHVAARAYDRAAIKFRGVDADINFNLSDYEEDLKQMKNLSKEEFVHILRRQSSGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMNPEAVDEGCSYNLDLNLGIATTPSYGNGSREKRGHLQFQPDPYDMHVGRISRMESNFDLGIGDPSLKRLVGTEERPSFFPNEERAERIRIGPSQGLPNWAWQTRGQVTATPVPPFSTAASSGFSFSATFPSNSVFPTRSTNSIPQSLCFTASGAAGANSSQYYYQMKSPRPQAPP	490

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva09g00193	490	CDD	AP2	158	216	IPR001471	GO:0003700\|GO:0006355
	Bva09g00193	490	MobiDBLite	consensus disorder prediction	93	159	-	-
	Bva09g00193	490	MobiDBLite	consensus disorder prediction	32	60	-	-
	Bva09g00193	490	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7	1	454	-	-
	Bva09g00193	490	SMART	rav1_2	250	313	IPR001471	GO:0003700\|GO:0006355
	Bva09g00193	490	SMART	rav1_2	158	220	IPR001471	GO:0003700\|GO:0006355
	Bva09g00193	490	MobiDBLite	consensus disorder prediction	98	116	-	-
	Bva09g00193	490	ProSiteProfiles	AP2/ERF domain profile.	250	307	IPR001471	GO:0003700\|GO:0006355
	Bva09g00193	490	Gene3D	AP2/ERF domain	249	308	IPR036955	GO:0003700\|GO:0006355
	Bva09g00193	490	Gene3D	AP2/ERF domain	157	215	IPR036955	GO:0003700\|GO:0006355
	Bva09g00193	490	SUPERFAMILY	DNA-binding domain	157	215	IPR016177	GO:0003677
	Bva09g00193	490	Pfam	AP2 domain	249	299	IPR001471	GO:0003700\|GO:0006355
	Bva09g00193	490	Pfam	AP2 domain	158	206	IPR001471	GO:0003700\|GO:0006355
	Bva09g00193	490	PRINTS	Ethylene responsive element binding protein signature	251	262	IPR001471	GO:0003700\|GO:0006355
	Bva09g00193	490	PRINTS	Ethylene responsive element binding protein signature	289	309	IPR001471	GO:0003700\|GO:0006355
	Bva09g00193	490	CDD	AP2	249	309	IPR001471	GO:0003700\|GO:0006355
	Bva09g00193	490	ProSiteProfiles	AP2/ERF domain profile.	158	214	IPR001471	GO:0003700\|GO:0006355
	Bva09g00193	490	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	1	454	-	-
	Bva09g00193	490	SUPERFAMILY	DNA-binding domain	249	308	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva09g00193	Bva-Chr9	964393	968476	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva09g00193	1	490	AP2-EREBP Transcription Factor Family	AT5G60120	44.808	1.71e-102	313

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Bva09g00193		AP2	2.9e-09	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva09g00193	K09284		-	gmx:100777102	619.772

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva09g00193	09	964393	968476	Bva07g02450	07	19757279	19761287	BWGD
	Bva09g00193	09	964393	968476	Bva09g00193	09	964393	968476	ECH
	Bva09g00193	09	964393	968476	Bva07g02450	07	19757279	19761287	ECH