Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00188 ATGGGTTGTTTCTTTTGCGGAGGGTCAAATAAAAATTCGCAGAGAAACAGCAGTAGAGAGAGCAAGAAGCCGAACCATTGTACTGGTGCAGATAAGGTTAAAGTCGATTTGAACGTCAATGGTAACAAGGAAGCTACTTCTAAGGATGATCAACTTTCTCAGGACgtgaagaatttaaatttgaaagaggCCTCCAATGATGGAGCAGTTCATGGTTACCGGGAGAAGACATTTACGTTCGATGAACTTGCTGCTGCAACAGGAAATTTTAGGTCTGACTGTTTTTTGGGTGAAGGAGGGTTTGGCAAGGTTTACAAGGGGCACTTGGATAAAATAAACCAGGTTGTGGCTATCAAACAACTTGATCCTAATGGATGTCAAGGGGTTAGGGAATTTGTCGTTGAAGTGTTGACATTGAGTCTTGCAGACCACCCTAATCTTGTCAAATTGATCGGGTTTTGTGGTGAGGGAGAGCAGAGGCTATTAGTTTATGAGTACATGCCACTAGGATCTTTGGAGAATCATTTGCATGATCTTCCACCTGGTAGAAAAGCTATTGATTGGAATACAAGAATGAAGATAGCAGCTGGGGCGGCTAGGGGTTTGGAATATTTGCACGATAAAATGAAGCCCCCTGTCATATATCGTGACCTAAAATGCTCAAACATTTTGCTAGGAGAGGGATATCATCCCAAGTTATCTGATTTTGGCTTGGCAAAAGTTGGTCCCAGCGGCGATAAAACTCATGTTTCAACAAGGGTTATGGGCACTTATGGGTATTGTGCTCCAGATTATGCAATGACAGGTCAGTTGACATTCAAGTCAGATATTTACAGCTTTGGGGTCGTTCTTCTGGAGCTCATTACAGGCAGGAAAGCTATCGACCACAAAAAATCTGCCAGAGAACAAAATCTGGTTGCATGGGCGAGGCCTTTATTCAAAGACAGGAGGAAATTCCCACAAATGGTTGACCCATTGCTTGAAGGTCAATATCCCGTGAGAGGTTTGTACCAAGTTCTTGCTATTGCTGCAATGTGTGTTCAAGAGCAGCCTAATATGCGGCCCGTTATAGCCGATGTGGTTACAGCCCTAAATTACCTTGCTTCCCAGAAATATGATCCTCAAACTCAGCCAGGACAAAGCTGCAAAGGAAGCCCGCCTTCTCCAAGACATGTTGGTAATGGGACTCAGACAGACAGACAGATGTA 1208 0.4305 MGCFFCGGSNKNSQRNSSRESKKPNHCTGADKVKVDLNVNGNKEATSKDDQLSQDVKNLNLKEASNDGAVHGYREKTFTFDELAAATGNFRSDCFLGEGGFGKVYKGHLDKINQVVAIKQLDPNGCQGVREFVVEVLTLSLADHPNLVKLIGFCGEGEQRLLVYEYMPLGSLENHLHDLPPGRKAIDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHKKSAREQNLVAWARPLFKDRRKFPQMVDPLLEGQYPVRGLYQVLAIAAMCVQEQPNMRPVIADVVTALNYLASQKYDPQTQPGQSCKGSPPSPRHVGNGTQTDRQM 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00188 402 SUPERFAMILY Protein kinase-like (PK-like) 76 376 IPR011009 -
Bva09g00188 402 Gene3D Transferase(Phosphotransferase) domain 1 167 382 - -
Bva09g00188 402 Gene3D Phosphorylase Kinase; domain 1 60 166 - -
Bva09g00188 402 PANTHER OS07G0668900 PROTEIN 1 385 - -
Bva09g00188 402 CDD STKc_IRAK 96 365 - -
Bva09g00188 402 Coils Coil 42 62 - -
Bva09g00188 402 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Bva09g00188 402 MobiDBLite consensus disorder prediction 372 402 - -
Bva09g00188 402 ProSiteProfiles Protein kinase domain profile. 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva09g00188 402 Pfam Protein kinase domain 95 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva09g00188 402 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 385 - -
Bva09g00188 402 SMART serkin_6 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva09g00188 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Bva09g00188 402 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00188 Bva-Chr9 919551 922954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00188 1 369 Glycoside Hydrolase AT3G07070 55.256 2.08e-143 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Bva09g00188 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00188 - - gmx:100794680 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00188 09 919551 922954 Bva07g02456 07 19805407 19808353 BWGD
Bva09g00188 09 919551 922954 Bva09g00188 09 919551 922954 ECH
Bva09g00188 09 919551 922954 Bva07g02456 07 19805407 19808353 ECH
Bva01g00451 01 3612952 3616612 Bva09g00188 09 919551 922954 ECH