Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00152 ATGTCTGCATCTCTGGATAGGTCCCTCGACGACATCATTAAGAGCAACAAGAAGTCTGGATCTGGAAACTACAGAGGTCGCGGCAGAGGATCCGGACCCGGTCCTGCTCGCCGCTTACCCAACCGTGCCGTCAATCGTTCAGCGCCTTATCCAACAGCTAAGGCACCGGAGACGACATGGCAGCACGATATGTTTATAGATCAGCCGGTGGCTGCGTTCCCAGCACAAGGCGGTCGAGCGTCTTCCATAGAAACGGGGACTAAGCTCTACATATCTAATTTGGATTATGGGGTTTCGAATGAGGATATTAAGGAATTGTTTTCTGAAGTTGGTGATCTGAAGCGCTGTGGAATTCACTATGATAGGAGTGGAAGATCGAAGGGTACAGCAGAAGTAGTCTTATCGCGACGAGCAGATGCTGTAGCTGCCGTAAAGAGATACAACAATGTTCAACTTGATGGGAAACCAATGAAGATTGAGATTGTGGGAACAAATGTTGCTACACCTGCAGTTACTCCTGCTGCAAATGGAGCCATTGGAAATTCTAATGGAATTCCCAGAAGTGGACAAGGGAGAGGTGGGGCACTAGGGAGGCTCCGTGGTGGAGGTGGTAGGGGGCGTGGGATACGAAGGGGCAGTCGAGGACGTGGAAGAGGTCGTGATGAAAAGATATCCGCAGAAGATCTTGATGCTGATTTGGAGAAATATCATGCAGAGGCAATGCAAGAGAACTA 734 0.4959 MSASLDRSLDDIIKSNKKSGSGNYRGRGRGSGPGPARRLPNRAVNRSAPYPTAKAPETTWQHDMFIDQPVAAFPAQGGRASSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRCGIHYDRSGRSKGTAEVVLSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNVATPAVTPAANGAIGNSNGIPRSGQGRGGALGRLRGGGGRGRGIRRGSRGRGRGRDEKISAEDLDADLEKYHAEAMQEN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00152 244 MobiDBLite consensus disorder prediction 215 230 - -
Bva09g00152 244 Coils Coil 226 244 - -
Bva09g00152 244 Gene3D - 74 226 IPR012677 -
Bva09g00152 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Bva09g00152 244 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 242 - -
Bva09g00152 244 MobiDBLite consensus disorder prediction 178 230 - -
Bva09g00152 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Bva09g00152 244 CDD RRM_THOC4 87 161 - -
Bva09g00152 244 Pfam C-terminal duplication domain of Friend of PRMT1 186 239 IPR025715 -
Bva09g00152 244 SMART FoP_duplication_2 175 244 IPR025715 -
Bva09g00152 244 MobiDBLite consensus disorder prediction 1 59 - -
Bva09g00152 244 SUPERFAMILY RNA-binding domain, RBD 18 161 IPR035979 GO:0003676
Bva09g00152 244 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 242 - -
Bva09g00152 244 SMART rrm1_1 88 160 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00152 Bva-Chr9 713573 717830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00152 86 161 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 3.30e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00152 K12881 - gmx:100775827 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00152 09 713573 717830 Bva07g02491 07 19978775 19981381 BWGD
Bva09g00152 09 713573 717830 Bva09g00152 09 713573 717830 ECH
Bva09g00152 09 713573 717830 Bva07g02491 07 19978775 19981381 ECH