Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00143 ATGGCGGAGACTGATAGTGTGCAAATGCAAGGGTCAACTGGGACTTCGGCAAACTTGCGATGGAACCCTACAAAAGAGCAAATAAGCATGCTAGAGAGCTTGTATATGCAGGGGATAAGGACCCCGAGTGCTGACCAAATACAACAGATCACTGCGAGGCTTCAAGCCTATGGCCACATCGAAGGCAAGAACGTCTTTTATTGGTTCCAGAATCACAAAGCAAGGCAGaggcagaagcagaagcaagaAACCATTGCTTATTTCAATCATTTTCTCCGTAGGTCGCCACCAATTTTCTCAACCCCACTTTGCCCAAATGTCATTTGCTCCCCGTATTACATGCCACAACAACATCCAAAGGTGCTTCTACCTGGATCAGGTGTCTGCAGGAGGAGACCAATGACTGATAAAGTTATGCCCATGGAGAATCCCATTTACTATGATGCCCCTCTGGTACGTGATGATCAACATGTCCACAGCAGAATCgcatttaataattacatgAGCCACAGTAAATACCTAGAAACTCTACCTCTCTTTCCTATACACCCAACAGGCATTTTGGAATCTAAAACATTAATGGATCAAGCATCTCCCATCGCTGTTGTCAAATCAGTTGCCACTCCTTCTTCAGGTTCTTCATCTGATAATATAGATGTAGATGGTGCTGGTCAACTTGGAGACAAACccttctttgattttctttcagaAACAAGAAGCTCCTG 725 0.4138 MAETDSVQMQGSTGTSANLRWNPTKEQISMLESLYMQGIRTPSADQIQQITARLQAYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFNHFLRRSPPIFSTPLCPNVICSPYYMPQQHPKVLLPGSGVCRRRPMTDKVMPMENPIYYDAPLVRDDQHVHSRIAFNNYMSHSKYLETLPLFPIHPTGILESKTLMDQASPIAVVKSVATPSSGSSSDNIDVDGAGQLGDKPFFDFLSETRSS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00143 241 CDD homeodomain 20 80 IPR001356 GO:0003677
Bva09g00143 241 Gene3D - 20 87 - -
Bva09g00143 241 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 238 IPR044555 GO:0003700|GO:0099402
Bva09g00143 241 MobiDBLite consensus disorder prediction 207 229 - -
Bva09g00143 241 Pfam Homeodomain 19 78 IPR001356 GO:0003677
Bva09g00143 241 SUPERFAMILY Homeodomain-like 15 86 IPR009057 -
Bva09g00143 241 SMART HOX_1 16 83 IPR001356 GO:0003677
Bva09g00143 241 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 2 238 - -
Bva09g00143 241 ProSiteProfiles 'Homeobox' domain profile. 14 79 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00143 Bva-Chr9 674982 676339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00143 12 241 Wox Gene Family AT5G59340 41.221 1.10e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Bva09g00143 Homeodomain 3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00143 - - gmx:100801698 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00143 09 674982 676339 Bva09g00143 09 674982 676339 ECH