Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00140 AtggttttttcttctattccaGTCTATTTAGATCCTCCCAATTGGCAGCAGCAACCAAATCATCAACATCATCCTGCACATGGCAGTGAAAGTACTCATCTGCTTCCACCGCTACCTCCACAAACCGTCCAAGTGGGAATTGGCGCGGGCTCAATCAGGCCCGGTTCCATGGCGGATCGAGCTCGGCTAGCCAAGATACCACCACCGGAGGCTGCTCTCAAGTGTCCACGCTGTGAGTCCACCAACACTAAATTTTGCTACTTCAATAATTACAGCCTCTCGCAACCTCGGCACTTCTGCAAGACATGTCGGCGATACTGGACAAGAGGAGGAGCTCTTAGGAATGTCCCTGTTGGTGGGGGATGCCGTAggaacaagaaaaacaaaaggagtCGCTCCAAATCTCCAGCAGACACTGACAAACAGGCCACAAGTGCAATCCCTTCGCCATCTTCGGGCGGCACCCGCACCACTGAGCTAATTGCTCAATTGCCTCAACCATCTAACTTGCCTTTCATGGCCCCCTCTTTACAGAATCTCACTCGCTATGGAGTAGGAAATATGACCCTCAACTTGCCACAAACACAAAGCACCGATCATACGGGCTTTCAAATGGGCAACAATTCAGGTGCGGGCAGTACTATTTTATCTGGTGGGGGAGTGGATCACTGGCGGCTGCAGCAATTTCCTTTCCTAAATAATTTCGTGTCAAGTGCCGGCGCTGGTTCCTACCCATTTCAGAGTGGAAGTGTTGAAGAAGGAGCCTCTAGCTTGGTAGGAGTTGGAGACGACTCACTTGCGAGTTCTAGGGTTACTACTCAGCTGCCAGCAATTAAATTGGAAGATAACAGAGGGCTAAATTTGTCAAGGTCACCTCTGAGTATCTCAGAGAATAACCAATTCTATTCATGGACTGATTTATCTGGCCTTGCTTCTTCTTCCACTGGCCACCTCTTGTA 959 0.4776 MVFSSIPVYLDPPNWQQQPNHQHHPAHGSESTHLLPPLPPQTVQVGIGAGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPADTDKQATSAIPSPSSGGTRTTELIAQLPQPSNLPFMAPSLQNLTRYGVGNMTLNLPQTQSTDHTGFQMGNNSGAGSTILSGGGVDHWRLQQFPFLNNFVSSAGAGSYPFQSGSVEEGASSLVGVGDDSLASSRVTTQLPAIKLEDNRGLNLSRSPLSISENNQFYSWTDLSGLASSSTGHLL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00140 319 MobiDBLite consensus disorder prediction 114 157 - -
Bva09g00140 319 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Bva09g00140 319 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 316 - -
Bva09g00140 319 Pfam Dof domain, zinc finger 72 127 IPR003851 GO:0003677|GO:0006355
Bva09g00140 319 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 316 IPR045174 GO:0003700|GO:0006355
Bva09g00140 319 MobiDBLite consensus disorder prediction 138 157 - -
Bva09g00140 319 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Bva09g00140 319 MobiDBLite consensus disorder prediction 13 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00140 Bva-Chr9 658890 660479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00140 40 318 C2C2-Dof Transcription Factor Family AT3G55370 44.224 1.63e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva09g00140 zf-Dof 1.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00140 - - gmx:100816635 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00140 09 658890 660479 Bva07g02502 07 20043160 20044759 BWGD
Bva09g00140 09 658890 660479 Bva09g00140 09 658890 660479 ECH
Bva09g00140 09 658890 660479 Bva03g01727 03 15528807 15530541 ECH