Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00139 ATGGAGGATGGAAGGGGAGGCCTGGTACAGAGCTTGATTGACTTGGTGAATGATATAGCTGTGATCTCAGATTACAGATGTACAGTGAAGAAGCAATACTGCAATTTGGCCAGAAGACTTAAGCTATTGACTCCAATGTTTGAAGAGATAAGAGACAGCAAAGAGGCCCTCCCTCAAGATACTTTAAAAGCTCTGCTTTCCTTGAAGGAAGCTCTGGAATCGGCCAAGGAGCTTCTTAGATTTGGGAGTGAGGGCAGCAAGATTTACCTGGCTCTAGAGAGGGACCAACTTATGCATAAATTCCTCGAGGTGACAGACCTGTTGGAACAAGCCTTGAGTGGAATTTCCTATGATAAACTTGACATATCCGATGAAGTTAAGGAGCAGGTCGAGCTTGTTCTTGCCCAATTCAGAAGAGCCAAAGGAAGGGCTGACGCACCCGACGTTGAGTTGCACGAAGATCTTGTATCTCTTTACAACAAAAGCAATGATACAGCACCAGATCCGGCTGTTCTACAGAGATTAGCTGAAAAATTGCAATTGATGGGAATATCCGATCTCACTCATGAGTCACTAGCTTTGCATGAGATGGTGACAGCAAGTGGTGGGGATCCAGGGTCAAGCATTGAAAAAATGTCAATGctgttgaagaaaataaaggattATGTGCAAACTGTACGTCTAGACTTGGATGATACTGTCGGAGGAAAAGACCTTTCTTCAAGTTTCAGCGAACAAGggacaaatgaaaaaaatcatCAGCCTCCTGTTATTCCTGATGATTTTCGATGTCCAATATCCCTAGAATTGATGAAAGACCCTGTCATTGTTTCAACGGGACAGACATATGAGCGCTCTTGTATAGAGAAATGGTTGGAAGCTGGAAATGGGACATGTCCAAAAACACAGCAGACACTCGCTAGTACTGTTTTAACTCCCAATTATGTGTTACGGAGCCTTATAGCACAGTGGTGCGAAACCAATGGCATAGAACCACCCAAACGGCCCAGCAGTTCTCGACCAAGTAAATCAACATCTTCCTGCTCACTTGCTGAGCTTAGCAAGATTGAAGAACTTCTTCGCAAGCTTAGATCTGGGAACCCTGAAGACCAGAGAGTAGCTGCAGGTGAGATCCGCCTTCTTGCAAAGCGCAATGCAGATAATCGTGTTGCCATTGCTGAAGCTGGGGCAATCCCTCTCCTTGTTGGACTCCTTTCAAAACCTGACTCCCGTATCCAAGAGCATGCTGTGACAGCCCTTCTGAATCTTTCTATATGTGAAAATAACAAAGGAAGTATTATATCTTCTGGGGCTGTTCCTGGCATAGTTCATGTGCTCAAGAAGGGCAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTGTTCAGCCTTTCAGTGATTGATGAAAATAAGGTTACTATTGGTTCTTCAGGAGCCATCCCACCACTGGTGACACTGCTGAGTGAGGGTACTCAAAGGGGTAAGAAAGATGCTGCGACCGCACTCTTCAATTTGTGCATTTACCAGGGTAACAAAGGAAAGGCAGTGAGGGCTGGTGTTATTCCCACACTGATGCTACTGTTGACAGAACCCGGAGGTGGCATGTTGGATGAAGCATTGGCTATTTTGGCAATACTGGCTAGCCATCCTGAGGGGAAGGCTGCAATTGGCGCTGCAGAGGCAGTGCCCGTTTTGGTAGAGGTTGTTGGAAATGGATCCCCACGGAACAGAGAGAATGCGGCTGCAGTTTTGGTGCACCTTTGTTCTGGAGATCAACAATATCTAATACAGGCCCAAGAGCTGGGTGTTATGGCTCCATTGTTGGATTTGGCTCAAAATGGTACAGACAGAGGCAGAAGAAAGGCCGCACAATTACTAGAGCGTATAAGCAGGTTCATTgatcagcagcagcaacaacgCGAGGAAGTTCAAACACAAACTGAAGTTGAAACACAGAACCTGGATGCACGATCACCTTCTGTTGTTGATAGCTA 1994 0.4468 MEDGRGGLVQSLIDLVNDIAVISDYRCTVKKQYCNLARRLKLLTPMFEEIRDSKEALPQDTLKALLSLKEALESAKELLRFGSEGSKIYLALERDQLMHKFLEVTDLLEQALSGISYDKLDISDEVKEQVELVLAQFRRAKGRADAPDVELHEDLVSLYNKSNDTAPDPAVLQRLAEKLQLMGISDLTHESLALHEMVTASGGDPGSSIEKMSMLLKKIKDYVQTVRLDLDDTVGGKDLSSSFSEQGTNEKNHQPPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGNGTCPKTQQTLASTVLTPNYVLRSLIAQWCETNGIEPPKRPSSSRPSKSTSSCSLAELSKIEELLRKLRSGNPEDQRVAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSKPDSRIQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMLLLTEPGGGMLDEALAILAILASHPEGKAAIGAAEAVPVLVEVVGNGSPRNRENAAAVLVHLCSGDQQYLIQAQELGVMAPLLDLAQNGTDRGRRKAAQLLERISRFIDQQQQQREEVQTQTEVETQNLDARSPSVVDS 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00139 664 Coils Coil 622 653 - -
Bva09g00139 664 Gene3D - 339 531 IPR011989 -
Bva09g00139 664 CDD RING-Ubox_PUB 262 304 IPR045210 -
Bva09g00139 664 MobiDBLite consensus disorder prediction 637 664 - -
Bva09g00139 664 Gene3D - 532 652 IPR011989 -
Bva09g00139 664 MobiDBLite consensus disorder prediction 239 258 - -
Bva09g00139 664 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 646 - -
Bva09g00139 664 SUPERFAMILY ARM repeat 349 639 IPR016024 -
Bva09g00139 664 SUPERFAMILY RING/U-box 248 334 - -
Bva09g00139 664 MobiDBLite consensus disorder prediction 239 253 - -
Bva09g00139 664 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Bva09g00139 664 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Bva09g00139 664 PANTHER U BOX DOMAIN-CONTAINING 6 646 - -
Bva09g00139 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 333 IPR013083 -
Bva09g00139 664 Gene3D - 7 118 IPR036537 GO:0007166
Bva09g00139 664 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Bva09g00139 664 SMART arm_5 467 507 IPR000225 GO:0005515
Bva09g00139 664 SMART arm_5 385 425 IPR000225 GO:0005515
Bva09g00139 664 SMART arm_5 549 589 IPR000225 GO:0005515
Bva09g00139 664 SMART arm_5 426 466 IPR000225 GO:0005515
Bva09g00139 664 SMART arm_5 508 548 IPR000225 GO:0005515
Bva09g00139 664 SMART arm_5 591 631 IPR000225 GO:0005515
Bva09g00139 664 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Bva09g00139 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Bva09g00139 664 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00139 Bva-Chr9 651017 655626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00139 1 638 U-box Gene Family AT3G46510 71.787 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00139 - - mnt:21407917 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00139 09 651017 655626 Bva09g00139 09 651017 655626 ECH