Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00116 ATGAGTTTTGTTTTCCGAGGGAGCCGGGGAGATATTGAAAGTGGATTCTCAGAATATGTTCCCGAAAGAACCACAATGCGTGTTCATCCAGCTCGACCTGTTAATAGCAATTCCTTAGCTTTTGTAATTACAGTTATTTTGCTATTCATGATAATAAACTCTCCTCAGAtgtctcattattttttgCTCTGGCTTGTACTGGCTATCTTTGTAATGGCAACAAGCCTGAGGATGTATGCAACTTGTCAACAACTTCAAGCTCAAGCCAGGGCGCATGCCGCCGCAGCCACTGGATTGCTTGGTCCTACTGAATTACGGCTTCATGTGCCACCATCAATAGCAATTGCAACGAGAGGACGTTTACAGGGACTTAGACTTCAGCTTGCACTTCTTGATCGTGAATTTGATGAGCTAGATTATGATACTTTGGGAGCTCTGGACACTTATACTGCTTCCAGTACTCGTTCCATGACTGAAGAAGAGATAAATTCCTTGCCTGTTCACTCGTATAGAGTTGCAGAGGCAACAAAGGATGGTTCATCAACGTTGGCATCCTCTTCAGGTGCAGCCGAGATTAAACAAGACAGTGGAGTAGCTGAGGGAAGTATGAAGCGCCCAGAAGACGAACTTACATGTACTATATGCTTGGAGCAAGTTAACAAGGGAGAGCTTGTTCGTAGCTTGCCATGCTTGCATCAGTTTCATACAAACTGCATCGATCCTTGGCTCAGACAACAAGGGACATGCCCTGTGTGTAAATTTAGGATAAGCTCGGGATGGCAGGAAAACAGAGAGAATGAACTGTA 806 0.438 MSFVFRGSRGDIESGFSEYVPERTTMRVHPARPVNSNSLAFVITVILLFMIINSPQMSHYFLLWLVLAIFVMATSLRMYATCQQLQAQARAHAAAATGLLGPTELRLHVPPSIAIATRGRLQGLRLQLALLDREFDELDYDTLGALDTYTASSTRSMTEEEINSLPVHSYRVAEATKDGSSTLASSSGAAEIKQDSGVAEGSMKRPEDELTCTICLEQVNKGELVRSLPCLHQFHTNCIDPWLRQQGTCPVCKFRISSGWQENRENEL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00116 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 259 IPR013083 -
Bva09g00116 268 PANTHER TARGET OF ERK KINASE MPK-1 1 266 - -
Bva09g00116 268 MobiDBLite consensus disorder prediction 178 204 - -
Bva09g00116 268 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Bva09g00116 268 MobiDBLite consensus disorder prediction 178 192 - -
Bva09g00116 268 CDD RING-H2_PA-TM-RING 211 253 - -
Bva09g00116 268 Pfam Ring finger domain 211 253 IPR001841 -
Bva09g00116 268 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 266 - -
Bva09g00116 268 SUPERFAMILY RING/U-box 207 258 - -
Bva09g00116 268 SMART ring_2 212 252 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00116 Bva-Chr9 532591 536572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00116 1 265 C3H Transcription Factor Family AT3G55530 71.161 2.78e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00116 K16283 - gmx:100805406 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00116 09 532591 536572 Bva09g00116 09 532591 536572 ECH