Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00087 ATGAGAAAGCCAGAGCCCTCCGCGAAAAACAGCAACAACAAGCTTAGGAAGGGATTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAATGGACAAGGTTGTTGGAGTGACGTGGCCAGAAATGCTGGTTTGGAAAGATGTGGCAAAAGCTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTCAAACGAGGAGCATTCTCACTACAAGAAGAAGAACTCATCATTCATTTGCATTCCCTTCTTGGCAACAGatggtctcaaataGCGGCGCGCTTGCCCGGCCGGACTGACAATGAAATCAAGAATTTCTGGAATTCgacaataaagaaaaggcTCAAGAACTTGTCATcaacaaacacaaacacaGGCTCACCAAACGCAAGCGAGTCTTCAATATCTGAGCCTAAAGACCTCAACATGAGAGGGCTTATTTCTACGCATGAGCAAAATGGATTTATGCCCGTGTTCAATTCATCTTCATCACCATCAATTCAAGCCACTTTTCTCAATAACATAATTGACAGATTGCCTACGTTGGAGCATGGACTAAACATGCCAACTGCTGCAGGTGGGTTCTTCAATGGTACAGGGCCATGCTTCACACAAAGTGGAGTTGATAGCaatggtttttattttgaaaatgggGTGTTTGGAAGTGTAAATATTGGAGCGGGAGCGGAAGGGGACCTGTTTGTTCCTCCTCTAGAGAGTGTTAGCAGTGCTACTGATAACCTGAAAGTGGAGATTACTTGCAATAGAAACACTAACAGTAATTACTTTGATGACTTAAACGGTATCGTTAACAACAATCACAGATCTGAAAATAAAGGTGGTAGTGGAGTGGAGAATTTATTTCAAGAGGAGTTAAGAATGGGAGAATGGGACTTGGAGGAGTTGATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTCGAGCTG 962 0.4054 MRKPEPSAKNSNNKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLERCGKSCRLRWINYLRPDLKRGAFSLQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSTNTNTGSPNASESSISEPKDLNMRGLISTHEQNGFMPVFNSSSSPSIQATFLNNIIDRLPTLEHGLNMPTAAGGFFNGTGPCFTQSGVDSNGFYFENGVFGSVNIGAGAEGDLFVPPLESVSSATDNLKVEITCNRNTNSNYFDDLNGIVNNNHRSENKGGSGVENLFQEELRMGEWDLEELMKDVSSFPFLDFSS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00087 320 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Bva09g00087 320 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Bva09g00087 320 CDD SANT 72 112 IPR001005 -
Bva09g00087 320 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Bva09g00087 320 PANTHER MYB DOMAIN PROTEIN 55 7 320 - -
Bva09g00087 320 PANTHER MYB TRANSCRIPTION FACTOR 7 320 - -
Bva09g00087 320 Gene3D - 14 70 - -
Bva09g00087 320 CDD SANT 20 64 IPR001005 -
Bva09g00087 320 Gene3D - 71 144 - -
Bva09g00087 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Bva09g00087 320 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Bva09g00087 320 MobiDBLite consensus disorder prediction 122 141 - -
Bva09g00087 320 SMART sant 16 66 IPR001005 -
Bva09g00087 320 SMART sant 69 117 IPR001005 -
Bva09g00087 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Bva09g00087 320 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00087 Bva-Chr9 426013 428117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00087 3 318 MYB Transcription Factor Family AT3G08500 46.471 1.14e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva09g00087 Myb_DNA-binding 4.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00087 K09422 - gmx:100786151 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00087 09 426013 428117 Bva07g02556 07 20295668 20297663 BWGD
Bva09g00087 09 426013 428117 Bva09g00087 09 426013 428117 ECH
Bva09g00087 09 426013 428117 Bva07g02556 07 20295668 20297663 ECH