Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00082 ATGCTGTCAACTATGTCCTCCCAGCCCCAGGGATATCACCAACCCTCATCCATCGAGGAAGTCCGAACCCTTTGGATTGGAGATTTGCAGTATTGGGTCGACGAAGCCTACCTTAATCACTGCTTTGCTCATACCGGAGAGGTAGTTTCCATAAAGATTATACGCAATAAGATCACTGGACAACCTGAGGGATATGGGTTTGTAGAGTTTGTTTCACATGCAGCAGCAGAAAGGATTCTGCAGACTTACAATGGGACGCAAATGCCTGGAACTGAACAAACTTTCAGGTTGAATTGGGCCTCTTTTGGTATTGGAGAACGGCGTCCTGATGCTGGGCCTGAGCACTCCATTTTTGTGGGGGATTTGGCACCTGATGTTACAGATTATCTACTGCAGGAGACATTTCGAGCACATTATCCTTCAGTTAGAGGTGCCAAAGTAGTGACTGATCCTAATACAGGGCGCTCCAAGGGATATggatttgttaaattttctgATGAGACAGAAAGGAACCGTGCTATGACTGAAATGAATGGGATGTATTGCTCAACAAGGCCAATGCGTATTAGTGCTGCAACACCCAAAAAGCCCACTGGTATTCAACAGCAATATGCTGTTGCCAAAGCAATATATCCAATCCCAGCTTACACTACCTCTACAGTTCTGCCTGATTATGATGCAAATAATACCACTATTTTTGTTGGTAATTTGGATATCAATGTCAATGAAGAGGAGCTGAAGCAAACTTTTTTGCAATTTGGAGAAATTCTCTCTGTCAAGATTCATGCTGGAAAGGGATTTGGTTTTGTTCAATTTGGGACCagAACATCTGCTGAAGAAGCCATTCTGAGGATGCAAGGAAAGGTGATAGGTCAAAAAGCAGTCCAAATTGCTTGGGGAAGGAGCTCAACAGCTAGACAGGACTTACCTGGTACCTGGGGGGCACAGATTGATTCAAGTCAATGGAGTGCTTACTATGGATACGGACAGGGCTATGAAGCCTATGCTTACGGGGCGACACATGATCCTTCTGCATATGCGTATGGTGCATATGCTGGTTATGCCCAGTATCCTCAACAGGTTGAAGGTGCTCAAGACATGGCAGCTATGGCAATGCCTACCATGGAACAAAGGGAGGAGCTGTACGATCCTCTGGCTATGCCTGATGTGGATAAGTTAAATGGTGCATACCTCTCAGTCCATGGAACTGCCATCTTAGGGAGGTCTCTCTGGCAGAAAACCTCGCCTTTCTTACAGCAAGCTTA 1265 0.449 MLSTMSSQPQGYHQPSSIEEVRTLWIGDLQYWVDEAYLNHCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDETERNRAMTEMNGMYCSTRPMRISAATPKKPTGIQQQYAVAKAIYPIPAYTTSTVLPDYDANNTTIFVGNLDINVNEEELKQTFLQFGEILSVKIHAGKGFGFVQFGTRTSAEEAILRMQGKVIGQKAVQIAWGRSSTARQDLPGTWGAQIDSSQWSAYYGYGQGYEAYAYGATHDPSAYAYGAYAGYAQYPQQVEGAQDMAAMAMPTMEQREELYDPLAMPDVDKLNGAYLSVHGTAILGRSLWQKTSPFLQQA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00082 421 Gene3D - 216 309 IPR012677 -
Bva09g00082 421 CDD RRM1_SECp43_like 23 103 - -
Bva09g00082 421 SUPERFAMILY RNA-binding domain, RBD 107 203 IPR035979 GO:0003676
Bva09g00082 421 SUPERFAMILY RNA-binding domain, RBD 212 330 IPR035979 GO:0003676
Bva09g00082 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 302 IPR000504 GO:0003723
Bva09g00082 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 102 IPR000504 GO:0003723
Bva09g00082 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 194 IPR000504 GO:0003723
Bva09g00082 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 10 360 - -
Bva09g00082 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 92 IPR000504 GO:0003723
Bva09g00082 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 295 IPR000504 GO:0003723
Bva09g00082 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Bva09g00082 421 Gene3D - 21 101 IPR012677 -
Bva09g00082 421 SMART rrm1_1 231 298 IPR000504 GO:0003723
Bva09g00082 421 SMART rrm1_1 23 98 IPR000504 GO:0003723
Bva09g00082 421 SMART rrm1_1 116 190 IPR000504 GO:0003723
Bva09g00082 421 CDD RRM2_SECp43_like 114 193 - -
Bva09g00082 421 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 10 360 - -
Bva09g00082 421 SUPERFAMILY RNA-binding domain, RBD 6 102 IPR035979 GO:0003676
Bva09g00082 421 Gene3D - 105 205 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00082 Bva-Chr9 396572 400422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00082 23 326 Eukaryotic Initiation Factors Gene Family AT1G49760 27.070 4.02e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00082 - - cam:101496574 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00082 09 396572 400422 Bva09g00082 09 396572 400422 ECH