Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00079 ATGAGTTGGAACTCGCACATGGAGGTCCATTATAATAACATTAGCTATCCCTACAATACAGCAGGAAgctttattgaatattttgaaggCCTCACCTATGAACatgtcaatttcattttttctggTGCTTCACATGCTCAGGATAGTTTGTACCCGTCAACAACGACAGGTATTTACAAGTTTGGACAGTCTGAACATGACAATACTTCATACTGTCACTATAGTCGTCCTTATGAGAATCATCACGAACCGCATATGGATGAGCACAGAAGGCCTTCAGAGAGCTTGCCAACAATCAACGAACAGATGGCGGCAGTAAGTACAGAATGGGGAGAAGGTGTAAACATTAAAGCACAAGACCATTCTATTGAATGTCCACGAAGACATCAAAACTCCCATGATTATCAGGTCATTTGGCAAGACAATATCGATCCTGACAACATGACTTATGAGgAACTACTCGAGTTAGGTGAAGCTGTTGGAACTCAAAGTCGCGGTCTCTCCCAAGAACAAATCTCTTCGCTTCCAACCTCAAAGTACAAGGGATGGTTCTTCTTAAGGAAAAAGTCACATGGTGAGAGATGCGTGATTTGTCAGATGGAATATAAAAGAGGGGACAAGCGTATAACCTTACCATGCAAGCATGCCTATCATGCTAGTTGTGGGACCAAATGGCTTAGCATCAATAAGGCTTGCCCTGTATGTTACATGGAGGTGTTTGCCGACGCGTCAAAACACAAATA 743 0.4051 MSWNSHMEVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQDSLYPSTTTGIYKFGQSEHDNTSYCHYSRPYENHHEPHMDEHRRPSESLPTINEQMAAVSTEWGEGVNIKAQDHSIECPRRHQNSHDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLSQEQISSLPTSKYKGWFFLRKKSHGERCVICQMEYKRGDKRITLPCKHAYHASCGTKWLSINKACPVCYMEVFADASKHK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00079 247 SUPERFAMILY RING/U-box 194 242 - -
Bva09g00079 247 ProSiteProfiles Zinc finger RING-type profile. 195 235 IPR001841 -
Bva09g00079 247 SMART ring_2 195 235 IPR001841 -
Bva09g00079 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 245 IPR033276 GO:0004842|GO:0016567|GO:0046621
Bva09g00079 247 Pfam Ring finger domain 194 235 IPR001841 -
Bva09g00079 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 245 - -
Bva09g00079 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 240 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00079 Bva-Chr9 376776 380631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00079 8 246 C3H Transcription Factor Family AT3G63530 45.306 9.93e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00079 K19045 - gmx:100805963 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00079 09 376776 380631 Bva07g02559 07 20310381 20314402 BWGD
Bva09g00079 09 376776 380631 Bva09g00079 09 376776 380631 ECH
Bva09g00079 09 376776 380631 Bva07g02559 07 20310381 20314402 ECH