Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00076 ATGACGAATCCCCACAACTCCAATGACTTCAATGGTGGCTTTGATCTCAATTCTCCTTGCCTTTTCTCTTGTTCGTCATCTTGCTCCATTAATCGGCCATTCTATTTTCCTTCTACTTATCATAACTTGCAGGTAAGTGGCAATATCTCTTTTACTCAGTACCAACCCTCACCCCCCTCTCCTCCTCTAAGAGAAGCTCTTCCCCTCCTTAACCCAAGTCCCGCAAGACATGACGATCCTTTTACTACCATGGAAGTGGAcaacaaggaaaaagaagcaagCATCTCTTCTAGCTCCATGGATGATGAAACTGTTACTGTGGCTTTAAATTTAGGGCTTCCCACCACAAGTTCATCTCACGATTTAGCTTCTTCAAACACAGACTCCGCAGACAAAGAAGAAGTCACTGTTGCTTCCGAGTATCCGCCAAACAGAATTAACAGAGGTCAGTATTGGATCCCTACACCAGCTCAGATTCTGATAGGTCCAACACAGTTTTCATGCCCTCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGCCATGGATCTCAGTATAGAAAGGGACCAGAGTCTCTGAGGGGAACACAACCAACAGCTATGCTTAGGCTGCCCTGCTATTGCTGTGCACCAGGATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGACTTCAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGAATCAAGCCCTTCATGTGTAGAAAATGCTGCAAAGCCTTTGCCGTTAGAGGTGATTGGAGAACCCACGAGAAGAACTGTGGGAAAATCTGGTATTGCTCTTGTGGCTCTGATTTCAAGCATAAAAGATCTCTTAAAGATCATATTAAGGCATTTGGACATGGCCATGCTGCTTATGGTATTGACTATCtcgaagaagaagatgaagcagCATCTGAAATTGAGCAGGAAAATATTGAAGCCTTCCACTTGTA 989 0.4216 MTNPHNSNDFNGGFDLNSPCLFSCSSSCSINRPFYFPSTYHNLQVSGNISFTQYQPSPPSPPLREALPLLNPSPARHDDPFTTMEVDNKEKEASISSSSMDDETVTVALNLGLPTTSSSHDLASSNTDSADKEEVTVASEYPPNRINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKIWYCSCGSDFKHKRSLKDHIKAFGHGHAAYGIDYLEEEDEAASEIEQENIEAFHL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00076 329 Gene3D Classic Zinc Finger 165 188 - -
Bva09g00076 329 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Bva09g00076 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Bva09g00076 329 MobiDBLite consensus disorder prediction 116 132 - -
Bva09g00076 329 MobiDBLite consensus disorder prediction 116 137 - -
Bva09g00076 329 SUPERFAMILY beta-beta-alpha zinc fingers 232 270 IPR036236 -
Bva09g00076 329 Gene3D Classic Zinc Finger 208 299 - -
Bva09g00076 329 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 3 323 - -
Bva09g00076 329 PANTHER ZINC FINGER PROTEIN WIP2 3 323 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00076 Bva-Chr9 361914 364290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00076 1 321 C2H2 Transcription Factor Family AT1G51220 60.819 2.09e-131 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva09g00076 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00076 - - gmx:100789416 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00076 09 361914 364290 Bva09g00076 09 361914 364290 ECH
Bva04g02208 04 21152037 21154743 Bva09g00076 09 361914 364290 ECH
Bva13g02372 13 17993700 17996164 Bva09g00076 09 361914 364290 ECH