Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00060 ATGTCATCAACCCCCAGGACCGCCACTTTCTCTTCCGGCAACTCATCCGACCACCTTGACACGCCCACACTAGACATTGAGTCCCCCAGTCTCTTGCAGTCGATTTCCGAGCACGGTGGGTATGCTTACGTCAGCATGGCGGCTCTGGCCGCGGCCGGGGACTTTCGCGCGGCTGAAGCAGCTCGTGAGATGGCGTGGGAGCAGCTACACTCGGGGCCCTGGCACTCCGTCCTGCCAGTATGGCGCGACGCTTACTCCATGGCATGCCTCCACGTTGCCAAATATCATTACCGCAGTGGTGAATTCAAGGAAGCCCTTAGGGCTTTGGATATGGGATTGATCATGGGAGGGATGCTTCTGAGGAAGGACTTGGACTCTGCAGTCAATAAAGTATCGGGGAAGGCCAAGGACGTTAGGGTTTCTGAGGAAAACTATCAAGGTATTGGGAAGTCCGAGCATCGACTTGTTGATCGGGAACTTAATGAGGCTGAGGTTCTCCAAATTTTACCTGTTAAGTCCCTTACTTGTAAGATTGTGGCGAAGAGGTCCAATCTATCACTGGAAACGTTCCTAAAAGATTACTACCTGTCTGGTTCCCCAGTTATTATCAGTGATTGTATGGCTCACTGGCCAgccaaaacaaaatggaataGCAGAGATTACTTGATGAGGGTTGCTGGTGACCGCACAGTTCCAGTTGAGGTTGGGAAGAACTATTTATGTGCTGAATGGAAGCAAGAGTTGATTACATTTTCGGAGTTTCTTCAGCGGATAGAGTCCTATGGCTGTTCTTTTAGTGTTCCAACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTCCGGAAAGACATTTGTATTCCTGACTATTGCTTTACCGGCGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCTGCTGGGACAGTAACACCTTTACACCATGATCCACATCATAACATATTTGCTCAGGTTGTTGGGAAGAAGTATATAAGGCTTTATTCTGCATCTCTATATGAGGAACTTTACCCCTACTCTGAATCCATGCTTAGCAATTCCAGCCAGGTTGATCTAGATGACATTGATGAGAGGAAGTTTCCTAAAGTGAAAGAGTTGGAATTTGTAGACTGTATCTTAGAGGAAGGTGAAATGCTATATATCCCACCTAAATGGTGGCACTATGTCCGGTCTCTAACGACCAGTTTATCAGTTAGCTTTTGGTGGGGCGAAGGAGAAAGTTCATCTGCATCGTA 1262 0.4691 MSSTPRTATFSSGNSSDHLDTPTLDIESPSLLQSISEHGGYAYVSMAALAAAGDFRAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKYHYRSGEFKEALRALDMGLIMGGMLLRKDLDSAVNKVSGKAKDVRVSEENYQGIGKSEHRLVDRELNEAEVLQILPVKSLTCKIVAKRSNLSLETFLKDYYLSGSPVIISDCMAHWPAKTKWNSRDYLMRVAGDRTVPVEVGKNYLCAEWKQELITFSEFLQRIESYGCSFSVPTYLAQHPLFDQINELRKDICIPDYCFTGGGELRSLNAWFGPAGTVTPLHHDPHHNIFAQVVGKKYIRLYSASLYEELYPYSESMLSNSSQVDLDDIDERKFPKVKELEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWGEGESSSAS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00060 420 Gene3D Cupin 178 411 - -
Bva09g00060 420 PANTHER - 40 413 - -
Bva09g00060 420 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 40 413 - -
Bva09g00060 420 Pfam Cupin-like domain 189 412 IPR041667 -
Bva09g00060 420 ProSiteProfiles JmjC domain profile. 263 420 IPR003347 -
Bva09g00060 420 MobiDBLite consensus disorder prediction 1 23 - -
Bva09g00060 420 SUPERFAMILY Clavaminate synthase-like 182 411 - -
Bva09g00060 420 SMART cupin_9 269 417 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00060 Bva-Chr9 281036 284828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00060 173 411 Acyl Lipid Metabolism Gene Families AT3G45880 25.263 1.31e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva09g00060 Cupin_8 1.4e-49 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00060 K24444 - gmx:100813075 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00060 09 281036 284828 Bva09g00060 09 281036 284828 ECH