Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00049 ATGATGGTAGATATAAGCTTAGCTTTCCATACTTGCCTGATTTACAAATGTTACCTGCAGAGAATTCcgaaagaatttataaaaagatttggGAGTCAAATATCTGGAGAGGCCACAATTAATGTTCCCGATGGGCGTGTTTGGACAATGGGATTGAAGAATTACGATGACGATGTTTGGTTTGGTGAAGGTTGGCCAGAATTCGCAAAGCATTATTCTCTTGGTTTTGGATCCCTTCTATGGTTCGAGTACAGAGGGAACTCAGAGTTGCACGTGTTTATATGTGATGCAAGTGGTGCTGAGATTTACTATCCATCCAAAGCCGACCTTGACAATCAGCAGCAGCACTTAGAGGGTCCTAGTGAAAAGTTTAGGCAAGATAATGAGATTGAAGATGAAGTAATTGATGTGGATAATTTTGATCTTGATCTTCTAAGTCGgggaaaatggaagaagaaacgTGGCGAAACTCAATCTAAAAGGAGTCGGAGTGGTAACCCTTTTTCCAGAATCAGGTCCAGGCTTCATCAAGGGGGCTATAGCTATGAGAGAAGAAGCAAAATGCTTAGGCAGGAAAATGAGGTTGCAATTGAATCAGAAGTAGTTGATGTGGAATTGGATAATCTAAATGTAAGCCATGGCAAAACTCGATCTAGAACTAGAAGGAATGATAATTCTTTTTCCAGGCTTCAAGGGGACTAcgagagaagaagaagcaaaaggcTTAGGCAGGAAAATGAGGCTAAAGTAGAACTAGAAGTAGTTGATGTGGATAGTCTAAATGTGAGGGCTAGTTCTCATAAAAGGCGTGATAAAACTCGATCTAGAAGGATGCCCAATTCTTCTTCTAGAGCAATTAAAGCTGCTCAGTCAGAAAATCCTCATTTCTCTGCATTAATAAAGCCATTTAATATTTGCTATGCTTTTGTGTACGTGCCTACTTGGTTTGCTAAAGAATATCTAAGAGGAGTAGTCAGTCTACATCTCGAGAATAGTAATGGGAAACGGTGGAAGGTTGGTTGCCATTCTCCTAATAGTAGATCTTCAGCTTTGAGAATAGGCAAGGGATGGAGGGATTTTGCAAGGGACAACCATTTGCAGGAAGGGGATGTATGTGTATTTGAGTTGATCAAGAGGAAGCAAGTTGTAATTCAAGTTACGGTATATCATGCTGATGATATATCATATCAAGGACAAGGGGgctatcaaaaaaaaagaagaagcaaaaggcTTAGGAAGGAAAATGAGGCTGAAGAAGATGCGAGGGATAACTCTTATAAACCTCAATCTAGAAGGATGcctaattcttcttcttcttcttcttcttcaaggaCAGAGAGATTAAAGGATACAGCAATTAAAATTGCTCAGAATTTCAAGCCAAAGAACCCTCATTTCCATGCAGTAATACAGCCATGGAATATGTACAATGCTTTTGTGTATGTGCCTGCTTGGTTTGCTAAAGAATATCTAAGAGGAGTAGTCAGTCTGAATCTCGAGAATGGCAATGGGAAGCGGTGGAAGGTTGCTTGCCGTTCTCCTAATAGTAATAAATCTTCAGCTTTGAGAATAGGCAGGGGATGGGGAGATTTTGCAAGGGACAGCCATTTGCAGGAAGGAGATGTCTGTGTTTTTCAGTTAGTCAAGAGGAAGCAGGTTATACTTCAAGTTACCATATTTCGTGTAGCCGAGGGCCTTCGCAAGTG 1706 0.3769 MMVDISLAFHTCLIYKCYLQRIPKEFIKRFGSQISGEATINVPDGRVWTMGLKNYDDDVWFGEGWPEFAKHYSLGFGSLLWFEYRGNSELHVFICDASGAEIYYPSKADLDNQQQHLEGPSEKFRQDNEIEDEVIDVDNFDLDLLSRGKWKKKRGETQSKRSRSGNPFSRIRSRLHQGGYSYERRSKMLRQENEVAIESEVVDVELDNLNVSHGKTRSRTRRNDNSFSRLQGDYERRRSKRLRQENEAKVELEVVDVDSLNVRASSHKRRDKTRSRRMPNSSSRAIKAAQSENPHFSALIKPFNICYAFVYVPTWFAKEYLRGVVSLHLENSNGKRWKVGCHSPNSRSSALRIGKGWRDFARDNHLQEGDVCVFELIKRKQVVIQVTVYHADDISYQGQGGYQKKRRSKRLRKENEAEEDARDNSYKPQSRRMPNSSSSSSSSRTERLKDTAIKIAQNFKPKNPHFHAVIQPWNMYNAFVYVPAWFAKEYLRGVVSLNLENGNGKRWKVACRSPNSNKSSALRIGRGWGDFARDSHLQEGDVCVFQLVKRKQVILQVTIFRVAEGLRK 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00049 568 ProSiteProfiles B3 DNA-binding domain profile. 295 392 IPR003340 GO:0003677
Bva09g00049 568 PANTHER B3 DOMAIN-CONTAINING 403 562 - -
Bva09g00049 568 CDD B3_DNA 294 380 IPR003340 GO:0003677
Bva09g00049 568 SUPERFAMILY DNA-binding pseudobarrel domain 18 99 IPR015300 -
Bva09g00049 568 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 20 391 - -
Bva09g00049 568 MobiDBLite consensus disorder prediction 428 446 - -
Bva09g00049 568 MobiDBLite consensus disorder prediction 213 243 - -
Bva09g00049 568 Pfam B3 DNA binding domain 21 97 IPR003340 GO:0003677
Bva09g00049 568 Pfam B3 DNA binding domain 308 386 IPR003340 GO:0003677
Bva09g00049 568 Pfam B3 DNA binding domain 469 561 IPR003340 GO:0003677
Bva09g00049 568 ProSiteProfiles B3 DNA-binding domain profile. 22 98 IPR003340 GO:0003677
Bva09g00049 568 CDD B3_DNA 464 561 IPR003340 GO:0003677
Bva09g00049 568 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 403 562 - -
Bva09g00049 568 SUPERFAMILY DNA-binding pseudobarrel domain 290 391 IPR015300 -
Bva09g00049 568 Gene3D - 276 394 IPR015300 -
Bva09g00049 568 Gene3D - 444 565 IPR015300 -
Bva09g00049 568 MobiDBLite consensus disorder prediction 263 289 - -
Bva09g00049 568 SUPERFAMILY DNA-binding pseudobarrel domain 460 561 IPR015300 -
Bva09g00049 568 MobiDBLite consensus disorder prediction 398 447 - -
Bva09g00049 568 PANTHER B3 DOMAIN-CONTAINING 20 391 - -
Bva09g00049 568 CDD B3_DNA 21 96 IPR003340 GO:0003677
Bva09g00049 568 MobiDBLite consensus disorder prediction 411 427 - -
Bva09g00049 568 ProSiteProfiles B3 DNA-binding domain profile. 465 563 IPR003340 GO:0003677
Bva09g00049 568 SMART B3_2 9 98 IPR003340 GO:0003677
Bva09g00049 568 SMART B3_2 466 563 IPR003340 GO:0003677
Bva09g00049 568 SMART B3_2 296 392 IPR003340 GO:0003677
Bva09g00049 568 Gene3D - 8 99 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00049 Bva-Chr9 247872 249746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00049 409 566 B3 DNA Binding Superfamily AT3G18990 32.317 1.56e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva09g00049 B3 3.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00049 - - rcu:8275548 201.445