Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00030 ATGATGAGGCTGCATACATATGCTGGGCTTAGTTTGATTGCGACTCTTGCTGTTACATATCATGCATTCAACAGTAGAGGCCAGTTTTATCCTGCAATGGTGTATCTCTCAACTTCCAAGATAAGTTTGGTGCTTCTTCTCAACATGGGGCTGGTCATTATGTGTGCATTATGGCAGTTTACCAAAAAGGTATTCTTAGGTTCCCTGCGGGAAGCTGAGGTCGAGAGGCTTAATGAGCAATCATGGAGAGAGGTTATGGAAATCCTCTTTGCAATTACTATTTTTAGACAGGACTTCTCTGTTACATTCCTTACTATGGTCACTGCACTTCTGTTGATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTGGAGTACATAGAAACCACTCCTACGGTCCCCACATTGTCTCACGTTCGAATTGTATCTTTTATGggttttctccttcttcttgaTGGTCTCTTCTTATATAGCTCTATGAAGCATTTGATACAAACGTGGCGGGCTTctgtttctctcttctttgcttTTGAGTACATGATTCTGGCAACAACAACCGTgtcaatttttgtaaaataccTTTTCTATGTCAGTGACATGCTAATGGAGGGACAATGGGAAAGGAAACCAGTCTTCACATTTTACCTGGAACTTATTCGGGACTTACTCCACTTGTCTATGTATCTGTGCTTCTTTCTTGTAATCTTCAAAAACTATGGTGTTCCTTTGCACTTAATACGGGAACTCTACGAGACATTTAGGAACTTCAAAGTCCGTGTTGCTGATTTCATACGTTATCGTAAGATCACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTACTGCCAAGAAACTAATATGTGGACATCTTTTCCACGTGCATTGCCTGCGATCGTGGTTGGAGCGACAAAATACTTGCCCTACCTGTAGAGCTTTAGTTGTACCACCGGAAAATGGAACAACTGCTGCTGCAGGACAGCATGGACCAGAGTCACACGCTAACCAGCAAGAAACAGGAACTGGAAGCACAGGAGAAGCTCCAGCAGGTGGTGGGGTGCCAGGCGATAATTTGAGTCAGCATCAAGCAAGACTCCAAGCTGCTGCTGCAGCTGCTTCAATATATGAGAAGTCTTATGTTTACCCTTCTGCATCTTCCTTAGTATGGTCCCCTGGATATGCTGTTTATCCTCCAATTCAAAAACATATGGCTGAATCTACTAATACTGAGCTCAATGGAGAGCAAGATAATGAACAATCACAGAAACAGTTTAGTGGACCAACAAACACGTCCTTTCCTCCAATGGggaaatgtctcttccttccTTCCCAGATATGTGGAACTAATTTGACATATGGAGAAGGATTTGGAAATGATCCAAATATGCCAAGCTCTCTGTTGGAAGCTCAAAGAAAACTTATACAGTACCAGATTGAGATTCTGCATAACCAGCTCCAGCTTCTGCAGAAGACAAAGGTTAAGGGAAGCTCGGATGAAGGTACATCATTGTCTGATAGCAGAGGGAAGAACGTTGCATCCTCGTCATCTGCATCTAATATTGCTAGTCATGAGGAGATTCAAGATGACAATGTATA 1652 0.4068 MMRLHTYAGLSLIATLAVTYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCALWQFTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLTMVTALLLIKALHWLAQKRVEYIETTPTVPTLSHVRIVSFMGFLLLLDGLFLYSSMKHLIQTWRASVSLFFAFEYMILATTTVSIFVKYLFYVSDMLMEGQWERKPVFTFYLELIRDLLHLSMYLCFFLVIFKNYGVPLHLIRELYETFRNFKVRVADFIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQNTCPTCRALVVPPENGTTAAAGQHGPESHANQQETGTGSTGEAPAGGGVPGDNLSQHQARLQAAAAAASIYEKSYVYPSASSLVWSPGYAVYPPIQKHMAESTNTELNGEQDNEQSQKQFSGPTNTSFPPMGKCLFLPSQICGTNLTYGEGFGNDPNMPSSLLEAQRKLIQYQIEILHNQLQLLQKTKVKGSSDEGTSLSDSRGKNVASSSSASNIASHEEIQDDNV 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00030 550 PANTHER - 1 448 - -
Bva09g00030 550 MobiDBLite consensus disorder prediction 511 550 - -
Bva09g00030 550 SUPERFAMILY RING/U-box 272 336 - -
Bva09g00030 550 SMART ring_2 292 329 IPR001841 -
Bva09g00030 550 MobiDBLite consensus disorder prediction 340 377 - -
Bva09g00030 550 MobiDBLite consensus disorder prediction 428 448 - -
Bva09g00030 550 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Bva09g00030 550 MobiDBLite consensus disorder prediction 344 363 - -
Bva09g00030 550 Pfam Ring finger domain 291 330 IPR001841 -
Bva09g00030 550 MobiDBLite consensus disorder prediction 511 544 - -
Bva09g00030 550 CDD RING-H2_synoviolin 289 330 - -
Bva09g00030 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Bva09g00030 550 PANTHER RING ZINC FINGER PROTEIN 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00030 Bva-Chr9 162645 167962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00030 1 534 C3H Transcription Factor Family AT3G16090 64.299 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00030 K10601 - gmx:100816441 842.032