Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02417 ATGCAATTAGTATCAAATGGTAGTAAGGAAGAATGTTCAGAAAGTGAACCTATCTTGAATCAACATCATAATTCACAAGGATCTGGAGACTCTTCGTTCTCATGTGAAATTACTGCTGCTGGAGGGGAATCGGCTGTTGCTGAGGATGATGATTTACAAAATGTTCATGTTGATGAGACTAGTCATCTGGTGAATGTAGATCAGCCACAATGTCGGATATGTCTTGATATAGGAGGAGAAGATTTAATTGCTCCATGTCATTGCAAAGGTACCCAAAAGTATGTCCACAGGTCATGTCTTGATAATTGGAGGTCTACTAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTTATATTACGTGCAAATGTCCCTCCTGATCGGTGGTGGTTGAGATTGAAATTTCAGTTCCTTGTTGCGAGGGatcatgcatttatttttatagttgttCAGCTGGTTGTTGCATTTTTGGGGGTGCTTGTGTACAAATTTTATGGAGAGGAACTAAGAGAAATGTTTGGTTATGACGAACATCCGTATGGATTCTACACTATGGCTGTTTTAGCTATTGTTTTAGTAGGTTTGCTGTATGGTTTCTTCATTGCGATAATATGCGGCCAAAGAATCAACGAATGCCATTACCATGTTCTTGCCAAACAAGAACTGACAAAGGAATATGTGGTAGAAGATCGAGAACATATAAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACGGAGCTGAGGATGTTGGGTCTTTACTA 776 0.3943 MQLVSNGSKEECSESEPILNQHHNSQGSGDSSFSCEITAAGGESAVAEDDDLQNVHVDETSHLVNVDQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIVVQLVVAFLGVLVYKFYGEELREMFGYDEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINECHYHVLAKQELTKEYVVEDREHIKNVPELDPSHVTELRMLGLY 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02417 258 CDD RING_CH-C4HC3_MARCH 71 119 - -
Bva08g02417 258 Pfam RING-variant domain 71 118 IPR011016 GO:0008270
Bva08g02417 258 PANTHER OS02G0132300 PROTEIN 2 257 - -
Bva08g02417 258 SMART ringv_2 70 119 IPR011016 GO:0008270
Bva08g02417 258 MobiDBLite consensus disorder prediction 1 32 - -
Bva08g02417 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 123 IPR013083 -
Bva08g02417 258 ProSiteProfiles Zinc finger RING-CH-type profile. 63 125 IPR011016 GO:0008270
Bva08g02417 258 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 257 - -
Bva08g02417 258 SUPERFAMILY RING/U-box 65 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02417 Bva-Chr8 15516113 15520681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02417 1 217 C3H Transcription Factor Family AT1G50440 61.290 9.71e-91 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02417 - - gmx:100789593 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02417 08 15516113 15520681 Bva08g02417 08 15516113 15520681 ECH