Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02405 ATGTCATCTGATCTCGTTTCCTCGTCACCGTCATCTTTGTTGCCCCCACCTCACCACCGCAATACCATTACCTCGCACTCTCGAAACTCCAAAGAGGTCTCTTTGCGCGACATTTCTCCCGTTGCTCTCTCTCTACCGGTGATTCTATTGCCTTTTCGTCACGCTCCCGCTCCCTCTTCACTCCCCTTTCACCCGCCATTGATTACTTCAAGTGCCAAGGTTTTTTTTACTCTTCCTCTATCATGGATGGCATTCATGGGGGTGATGCTCGAATACACGAGTAACGCACAACATCCTATGCGTGTACAATATCTGCAAGAACACGAACATCATGGCTTGCACCACATGAGTAATGGGAATGGCATGGAGGAGGATCATAATAACGGTGCTGATAATAATGGGCCAGGTTTATGTATTTGGCTCTGTGTCGCCGAAAAGGTTCAAGCTGTACTTTTACTATTGGGGGGGCATGAAATACATCCAAGTATGCCTACCATCCCTGTAACCCCTCTTCATAATAATCAGGGATTTGCTGAGGTAGCTTTAAGGATGCAAAGAAATAAAGGTCAGTTCACTTTTTCCAAGTCAAGTAATGACGATTCTGCATCAGCTGCAACAAACTGGGGGACGAGTGAAAGCTGGTCATCTGACAATAATGGATCACAACAACAGGATATTGTATGTAGGCACTGCGGCATCAGTGAGAAGTGCACGCCAATGATGCGACGGGGGCCTGAAGGGCCAAGGACCCTTTGTAATGCATGTGGACTTATGTGGGCAAATAAGGGAACTCTGAGGGACCTGTCAAAGGCCGCAGCACCCTTGCCTGTACCTAATTCTTCATTAAACAGGAATGAGaacaaaaattttgaggGCCGGGAGACGTA 887 0.4667 MSSDLVSSSPSSLLPPPHHRNTITSHSRNSKEVSLRDISPVALSLPVILLPFRHAPAPSSLPFHPPLITSSAKVFFTLPLSWMAFMGVMLEYTSNAQHPMRVQYLQEHEHHGLHHMSNGNGMEEDHNNGADNNGPGLCIWLCVAEKVQAVLLLLGGHEIHPSMPTIPVTPLHNNQGFAEVALRMQRNKGQFTFSKSSNDDSASAATNWGTSESWSSDNNGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAAPLPVPNSSLNRNENKNFEGRET 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02405 295 Pfam GATA zinc finger 228 264 IPR000679 GO:0006355|GO:0043565
Bva08g02405 295 MobiDBLite consensus disorder prediction 272 295 - -
Bva08g02405 295 CDD ZnF_GATA 227 270 IPR000679 GO:0006355|GO:0043565
Bva08g02405 295 ProSitePatterns GATA-type zinc finger domain. 228 255 IPR000679 GO:0006355|GO:0043565
Bva08g02405 295 PANTHER GATA TRANSCRIPTION FACTOR 28 179 288 - -
Bva08g02405 295 PANTHER GATA TRANSCRIPTION FACTOR 28 179 288 IPR045280 GO:0006355
Bva08g02405 295 PANTHER GATA TRANSCRIPTION FACTOR 28 144 175 IPR045280 GO:0006355
Bva08g02405 295 PANTHER GATA TRANSCRIPTION FACTOR 28 144 175 - -
Bva08g02405 295 SMART GATA_3 222 275 IPR000679 GO:0006355|GO:0043565
Bva08g02405 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 223 277 - -
Bva08g02405 295 MobiDBLite consensus disorder prediction 1 31 - -
Bva08g02405 295 ProSiteProfiles GATA-type zinc finger domain profile. 222 270 IPR000679 GO:0006355|GO:0043565
Bva08g02405 295 Gene3D - 218 281 IPR013088 GO:0006355|GO:0008270
Bva08g02405 295 MobiDBLite consensus disorder prediction 191 221 - -
Bva08g02405 295 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02405 Bva-Chr8 15451183 15456220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02405 92 291 Tify Gene Family AT1G51600 41.577 4.99e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva08g02405 GATA 2.5e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02405 - - pvu:PHAVU_008G254600g 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02405 08 15451183 15456220 Bva08g02405 08 15451183 15456220 ECH