Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02386 ATGAAGCTCACTGTGAAGACTTTGAAAGGAAGCCATTTTGAAATCAGTGTTCAGCCCTCCGATACTGTTATGGCTGTGAAGAAGAATATTGAAGATatacaaggaaaaaataattatccatGTGGACAGCAATTGCTGATTCACAATGGCAAGGTGTTGAAAGATGAAACTACACTAGCTGACAACAAGGTCTCTGAAGATGGCTTTCTTGTTGTCATGCTTAGCAAGAGTAAAGCTTCGGGTTCATCTGGGGCTTTATCCTCTCAGCCTGCCAATAGTCCTCCTCCTACTGTATCAACTTCAAATCCTACTCCTGCACCCGAACTTCCAGTACAAACTCAGGCTGCAAGAGACAGTACACCTGCTGCAGACAGCACAACTGCAAATGCTGTTCCTACAGATAATTATGGTCAAGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAGTTGGGACAGAGAAACAGTTACCCGTGCACTTCGGGCAGCTTACAATAACCCAGAGCGTGCTGTAGATTACTTATATTCTGGAATTCCTGAGGCAACTTCCGTACCAGTTGCTCATTACCCAGCTAGTCAAACTACTGAAACAGGTGGGGCCACTGCTGGAGCTGTTTCTGGAGGGCCTAACTCATCACCCCTAAATATGTTTCCAGAgGAGACAATTTCTGGTGCTGGTGCTGGACTTGGATCTCTTGACTTCCTTAGGAACAATCCCCAGttCCAAGCATTGCGTTCAATGGTGCAATCCAACCCACAAATTCTACAGCCCGTGCTTCAAGAGCTTGGAAAGCAGAATCCCCATCTTCTAAGACTAATTCAAGAGCATCATGCTGAGTTTCTTCAGTTAATAAATGAACCTGTTGAGGGTTCTGAGGGTGATATATTTGACCAACAAGAGCAAGACATGCCGCATGCCATCAATGTTACACCAGCTGAGCAGGAGGCAATTGGAAGGCTGGAAGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCGTTTTTGGCTTGTGATCGTGACGAGCAATTAGCAGCAAACTACTTATTGGAGAATGCTGGGGATTTTGAGGATTG 1112 0.4424 MKLTVKTLKGSHFEISVQPSDTVMAVKKNIEDIQGKNNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKASGSSGALSSQPANSPPPTVSTSNPTPAPELPVQTQAARDSTPAADSTTANAVPTDNYGQAASNLVAGSNLEQTIQQIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPEATSVPVAHYPASQTTETGGATAGAVSGGPNSSPLNMFPEETISGAGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPHLLRLIQEHHAEFLQLINEPVEGSEGDIFDQQEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02386 370 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Bva08g02386 370 SMART CBM 243 286 IPR006636 -
Bva08g02386 370 Gene3D - 142 192 - -
Bva08g02386 370 SMART uba_6 149 189 IPR015940 -
Bva08g02386 370 SMART uba_6 326 363 IPR015940 -
Bva08g02386 370 Pfam XPC-binding domain 245 300 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bva08g02386 370 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 324 364 IPR015940 -
Bva08g02386 370 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 369 - -
Bva08g02386 370 Gene3D - 1 80 - -
Bva08g02386 370 Pfam UBA/TS-N domain 326 361 IPR015940 -
Bva08g02386 370 Pfam UBA/TS-N domain 149 187 IPR015940 -
Bva08g02386 370 SMART ubq_7 1 75 IPR000626 GO:0005515
Bva08g02386 370 TIGRFAM rad23: UV excision repair protein Rad23 1 369 IPR004806 GO:0006289
Bva08g02386 370 Gene3D - 235 301 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bva08g02386 370 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Bva08g02386 370 MobiDBLite consensus disorder prediction 81 95 - -
Bva08g02386 370 CDD UBA1_Rad23_plant 143 192 - -
Bva08g02386 370 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 369 - -
Bva08g02386 370 Gene3D - 317 365 - -
Bva08g02386 370 SUPERFAMILY UBA-like 146 198 IPR009060 GO:0005515
Bva08g02386 370 SUPERFAMILY XPC-binding domain 242 308 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bva08g02386 370 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Bva08g02386 370 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 147 190 IPR015940 -
Bva08g02386 370 PRINTS DNA repair protein Rad23 signature 320 336 IPR004806 GO:0006289
Bva08g02386 370 PRINTS DNA repair protein Rad23 signature 352 367 IPR004806 GO:0006289
Bva08g02386 370 PRINTS DNA repair protein Rad23 signature 271 293 IPR004806 GO:0006289
Bva08g02386 370 PRINTS DNA repair protein Rad23 signature 337 351 IPR004806 GO:0006289
Bva08g02386 370 MobiDBLite consensus disorder prediction 104 134 - -
Bva08g02386 370 MobiDBLite consensus disorder prediction 81 134 - -
Bva08g02386 370 CDD Ubl_Rad23 1 74 - -
Bva08g02386 370 SUPERFAMILY UBA-like 305 367 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02386 Bva-Chr8 15334866 15339555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02386 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 7.79e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02386 K10839 - gmx:100819019 584.334