Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02351 ATGGATATCAAAGCAGAGAATAGGCAAACAGAAAAACAAGATCAAAAGCACCCACACGATCCCTCAGCTACTCATCTTCTACTTGATCTAAGTCTCTCTAGAAAAGATTCTGGTGATGGATCAAAGCCAGAGCTGAATCTCATAGACTGTTTTGATACGAATTCATCAAGGAACTCTTCGGAATCTTCTCATGGTAATGAGCTGGAGCCAAGGATATTTTCATGCAACTACTGCCAGAGGAAATTTTATAGTTCGCAGGCTCTTGGAGGGCATCAGAATGCACATAAGCGGGAAAGGACTTTGGCCAAAAGAGGACACAAAATTGATACTGCAGTTTCAGTAGATTTTGAAAGGTACTCTAGTATGGCTTCTCTGCCTTTGCATGGCTTGCATAATAGATCACTTGGAATTCAAGTGCATTCTATGATTAGCAAGCCCTCTCATCAAACACCCCTTATTGGTTTCTCTCGCTCCCATGCTCAAAATGAGTGGCGAAGGCAGCTTATTGATTTTCAACCTGCTATTGGGAAACTTTCATCAGGGAATGTCCATCTTGAATCCGAAACTGAAACATCTTTGGCTGCTGGCGTTCCAAGGTTGGATGGTGATAGAAAGTTTTCTTCTCCGAGAATTGTCACAGAAGGAATAGCAGGTTATTGGCTGGGTGGTGTTACCCATTTGAAGACTAAACAAGATGAGCTGCAGAAGCTTGATCTGTCCCTCAAACTCTA 731 0.4241 MDIKAENRQTEKQDQKHPHDPSATHLLLDLSLSRKDSGDGSKPELNLIDCFDTNSSRNSSESSHGNELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKIDTAVSVDFERYSSMASLPLHGLHNRSLGIQVHSMISKPSHQTPLIGFSRSHAQNEWRRQLIDFQPAIGKLSSGNVHLESETETSLAAGVPRLDGDRKFSSPRIVTEGIAGYWLGGVTHLKTKQDELQKLDLSLKL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02351 243 Gene3D Classic Zinc Finger 52 122 - -
Bva08g02351 243 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 243 - -
Bva08g02351 243 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 243 IPR044246 GO:0009788
Bva08g02351 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 100 IPR013087 -
Bva08g02351 243 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Bva08g02351 243 SUPERFAMILY beta-beta-alpha zinc fingers 70 100 IPR036236 -
Bva08g02351 243 MobiDBLite consensus disorder prediction 1 28 - -
Bva08g02351 243 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02351 Bva-Chr8 15194450 15195181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02351 28 243 C2H2 Transcription Factor Family AT5G10970 44.248 8.05e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva08g02351 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02351 08 15194450 15195181 Bva02g02565 02 24078966 24080225 ECH
Bva08g02351 08 15194450 15195181 Bva08g02351 08 15194450 15195181 ECH