Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02347 ATGGCCAGACCCCAACAGCGCTATCGAGGTGTCCGCCAGAGGCATTGGGGCTCCTGGGTCTCCGAAATTCGCCACCCTCTATTGAAAACTAGGATATGGCTGGGGACCTTCGAAACGGCAGAGGATGCAGCAAGAGCATACGACGAAGCAGCAAGGCTAATGTGTGGGCCAAAAGCACGCACCAATTTTCCTTATAATCCCAGTGAGCCGcaatcttcttcttccaagCTTCTTTCTGCAACTTTGACGGCAAAGCTTCACAAATGCCACATGGCCTCTCTTTCCCTTCAAATGGCCAAGCAGCAGAAACCAGTACAGAAGGAGGCTCAATATCAACAAGCAGAGCGTTCGAACCCATTTGCCTCTGGCAATGCCGTTGCAGGAACGAGTGCAGAAACCAGTTTCGGATGGCCAGAGAAGCAACGCGAGGAATCCCAATGGCTAGAGGACAATTGGGTTGGTGAACAAGGCCAAGATCAAGATACGCAGCAGCAGTTTCAGCCAGTTCTTGAAGATGATCACATAGAGCAGATGATACAGGAGCTGCTTGATTATGGCTCAATTGAGCTTTGCTCTGTTGGCTCAGCTTA 590 0.4932 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPSEPQSSSSKLLSATLTAKLHKCHMASLSLQMAKQQKPVQKEAQYQQAERSNPFASGNAVAGTSAETSFGWPEKQREESQWLEDNWVGEQGQDQDTQQQFQPVLEDDHIEQMIQELLDYGSIELCSVGSA 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02347 196 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Bva08g02347 196 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Bva08g02347 196 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Bva08g02347 196 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Bva08g02347 196 MobiDBLite consensus disorder prediction 151 168 - -
Bva08g02347 196 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Bva08g02347 196 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Bva08g02347 196 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Bva08g02347 196 PANTHER ETHYLENE RESPONSE FACTOR 1 192 - -
Bva08g02347 196 MobiDBLite consensus disorder prediction 105 136 - -
Bva08g02347 196 MobiDBLite consensus disorder prediction 105 168 - -
Bva08g02347 196 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Bva08g02347 196 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02347 Bva-Chr8 15174720 15178101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02347 1 193 AP2-EREBP Transcription Factor Family AT5G25190 62.694 8.01e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva08g02347 AP2 8.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02347 - - gmx:100777851 303.908