Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02200 ATGGAAATGCCAGAATACTTTGTAGGTGGCTATCTCAGTGCCGAAGCAGACCAATTCTCGCCGGAGAAGCGACACGGTGACCAGAAGCCCGGCGAACCGTTCGCCATTGACGACCTCCTCGACTTCTCTAACGCAGATGCTATTACGTCTGATGGTTTCTTTGATAATGTCGCCGGAAACTCCACTGATTCTTCCACGGTTACCGCGGTTGACAGCTGCAACTCCTCAATTTCTGGCAACGACAACCACCTCTCCGGCAACATTGCCTCTCGAGGTTTCGGTGATCCTCAGTTCTCCGGAGAACTCTGCGTTCCGTATGACGACATGGCTGAGCTAGAATGGCTATCGAACTTTGTGGAAGACTCATTCTCAGCCGAAGAAGAGCTAAAAACGCTCCACCTTCTCTCCGGAGCCACCGCTTCCACCAATGTCACGAAAACCCAGACTTCGGAATCCTCATCATCCTCCGAAACTCTCCCACCATTCGCTGCTGAACCCCATCGAAATGCACCGTTTTTCCACCCAGAAACTCCACTTCCAGGCAAGGCCCGAAGCAAGCGTTCACGCGCCGCTCCCGGGGATTGGTCCACGCGCCTCCTCCACCTTACCACCCCACCACTCACCGCCGCGACGGCCGAACAGAAACCGGTCAAGCCAGCGCCGGTGAAGAAGAGGGAGAGTTCCAATTCGGACTCTTCGGGTAGGAAATGTTTGCACTGTGCTGCCGAGAAGACACCGCAATGGCGAACCGGACCCTTGGGCCCAAAGACGCTGTGCAATGCTTGTGGAGTTCGATACAAGTCCGGGAGGTTAGTGCCGGAATACCGACCGGCGGCGAGCCCGACGTTTTTGTCGACGAAGCACTCCAATTCGCATAGGAAGGTTTTGGAGCTGAGGAGGCAAAAAGAGTTACTACGACATCAACAGCAGCAGTTGCTTAGTCAGAGTTCGCTTTTCGGCGTTTCCAACGGTGGAGATGATTACTTGATTCGCCATCGTACTGGGCCAGATTTTAggcaaattattta 1028 0.536 MEMPEYFVGGYLSAEADQFSPEKRHGDQKPGEPFAIDDLLDFSNADAITSDGFFDNVAGNSTDSSTVTAVDSCNSSISGNDNHLSGNIASRGFGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLHLLSGATASTNVTKTQTSESSSSSETLPPFAAEPHRNAPFFHPETPLPGKARSKRSRAAPGDWSTRLLHLTTPPLTAATAEQKPVKPAPVKKRESSNSDSSGRKCLHCAAEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFLSTKHSNSHRKVLELRRQKELLRHQQQQLLSQSSLFGVSNGGDDYLIRHRTGPDFRQII 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02200 342 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Bva08g02200 342 MobiDBLite consensus disorder prediction 218 232 - -
Bva08g02200 342 PANTHER GATA TRANSCRIPTION FACTOR 9 1 342 - -
Bva08g02200 342 Coils Coil 295 315 - -
Bva08g02200 342 SMART GATA_3 231 281 IPR000679 GO:0006355|GO:0043565
Bva08g02200 342 CDD ZnF_GATA 236 287 IPR000679 GO:0006355|GO:0043565
Bva08g02200 342 PIRSF Txn_fac_GATA_plant 17 323 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bva08g02200 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 294 - -
Bva08g02200 342 MobiDBLite consensus disorder prediction 142 160 - -
Bva08g02200 342 PANTHER GATA TRANSCRIPTION FACTOR 1 342 - -
Bva08g02200 342 Pfam GATA zinc finger 237 270 IPR000679 GO:0006355|GO:0043565
Bva08g02200 342 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Bva08g02200 342 MobiDBLite consensus disorder prediction 142 235 - -
Bva08g02200 342 Gene3D - 231 281 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02200 Bva-Chr8 14441743 14443439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02200 32 342 C2C2-Gata Transcription Factor Family AT4G32890 46.688 8.71e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva08g02200 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02200 - - gmx:100776605 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02200 08 14441743 14443439 Bva08g02200 08 14441743 14443439 ECH