Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02154 ATGGCTCAGCCTCTGCAACCATACGATTCCTATTACCTCCACCAACAAGATGAACGGAGCAACATCAACACACTCTTCGTCTCTGGCCTCCCAGACGACGTAAAGGCGCGTGAGATTCACAACCTCTTTCGCCGTCGTCCTGGCTTCGACTCGTGCCAGCTCAAGTACACTGGCCGGGGCAACCAGGTTGTTGCATTTGCTACCTTTTTTAATCATCAATCAGCAATGGCAGCGATGCATGCATTAAATGGTGTGAAATTTGATCCTCAAGCTGGATCCGTTCTGCATATTGAACTTGCCAGATCAAACTCAAGGAGAAAGCGTAAGCCAGGTAGTGGACCCTATGTTGTTATAGATAAAAGATCTAAAGGGGAGACTGATGCTCATGCATCTTCAAGTGAGGATGGTGATAGTGATTCTGATGAACATGACAGCAACCATGGTGATACAGCAACCACTAAAAGGGTTGATAGTACAGCTGGTTCTGACAATGCTTTGCCTGTTGTAAATGAGCAGCAAGTAAAGACTGCTGATGGGGGAGCATGTTCTACCCTCTTCATCGCAAATCTCGGTCCAAACTGTACCGAAGATGAACTGAAACAAGCCTTTTCTGTGTATACTGGATTCAATTTGGTCAAAATGCGTTCTAGAGGAGGAATGCCAGTTGCCTTTGCTGATTTTGAGGAAATTGAACAGGCTACTAAGGCTATGAATGAACTTCAGGGGAGCACATTGCCATCATCAGATCGGGGTGGCATGCACATAGAATATGCAAGGTCTAAAATGAGGAAGCATTA 797 0.4567 MAQPLQPYDSYYLHQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFFNHQSAMAAMHALNGVKFDPQAGSVLHIELARSNSRRKRKPGSGPYVVIDKRSKGETDAHASSSEDGDSDSDEHDSNHGDTATTKRVDSTAGSDNALPVVNEQQVKTADGGACSTLFIANLGPNCTEDELKQAFSVYTGFNLVKMRSRGGMPVAFADFEEIEQATKAMNELQGSTLPSSDRGGMHIEYARSKMRKH 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02154 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 247 IPR000504 GO:0003723
Bva08g02154 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 88 IPR000504 GO:0003723
Bva08g02154 265 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 8 254 - -
Bva08g02154 265 MobiDBLite consensus disorder prediction 120 151 - -
Bva08g02154 265 CDD RRM_RBPMS_like 23 98 - -
Bva08g02154 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
Bva08g02154 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 102 IPR000504 GO:0003723
Bva08g02154 265 PANTHER RNA-BINDING PROTEIN-RELATED 8 254 - -
Bva08g02154 265 MobiDBLite consensus disorder prediction 102 167 - -
Bva08g02154 265 Gene3D - 176 265 IPR012677 -
Bva08g02154 265 SMART rrm1_1 184 256 IPR000504 GO:0003723
Bva08g02154 265 SMART rrm1_1 24 98 IPR000504 GO:0003723
Bva08g02154 265 MobiDBLite consensus disorder prediction 152 167 - -
Bva08g02154 265 CDD RRM_scw1_like 181 259 - -
Bva08g02154 265 Gene3D - 18 105 IPR012677 -
Bva08g02154 265 SUPERFAMILY RNA-binding domain, RBD 23 245 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02154 Bva-Chr8 14186057 14189632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02154 6 247 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 4.10e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02154 - - cam:101503574 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02154 08 14186057 14189632 Bva08g02154 08 14186057 14189632 ECH